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The map label for this gene is cspB [H]

Identifier: 118477138

GI number: 118477138

Start: 1593763

End: 1593996

Strand: Reverse

Name: cspB [H]

Synonym: BALH_1441

Alternate gene names: 118477138

Gene position: 1593996-1593763 (Counterclockwise)

Preceding gene: 118477146

Following gene: 118477137

Centisome position: 30.32

GC content: 37.18

Gene sequence:

>234_bases
ATGAAAAAAGCAAATGTTTTTAGGAGGAATTGTAACATGCAAGGAAAAGTAAAATGGTTTAACAACGAAAAAGGTTTTGG
ATTTATCGAAATGGAAGGCGCTGACGATGTATTCGTACATTTCTCTGCGATTCAAGGCGAAGGCTACAAAGCTTTAGAAG
AAGGTCAAGAAGTATCTTTTGATATCACTGAAGGAAACCGCGGACCTCAAGCTGCTAACGTAGTAAAACTTTAA

Upstream 100 bases:

>100_bases
AATTCTCCCAATTCGTGTATATTTAAATTAATCATTTAGCAGAATATTCAAGATTATAGCATTTTTAGTTTATATTATCT
TTTCAAATGAATTTCACTAA

Downstream 100 bases:

>100_bases
TCCAACATATAACAGGAGGTTACCTTACTTGGTAACCTCCTTTGTTATTCCTTTGTATATTTCCGTTTTACAGAGCAAAA
ACTATGTGAAATGCGCAATA

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MKKANVFRRNCNMQGKVKWFNNEKGFGFIEMEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRGPQAANVVKL

Sequences:

>Translated_77_residues
MKKANVFRRNCNMQGKVKWFNNEKGFGFIEMEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRGPQAANVVKL
>Mature_77_residues
MKKANVFRRNCNMQGKVKWFNNEKGFGFIEMEGADDVFVHFSAIQGEGYKALEEGQEVSFDITEGNRGPQAANVVKL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=63.6363636363636, Blast_Score=87, Evalue=2e-19,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=63.6363636363636, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=60.9375, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1788126, Length=68, Percent_Identity=57.3529411764706, Blast_Score=83, Evalue=4e-18,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=59.0909090909091, Blast_Score=80, Evalue=3e-17,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=60.6060606060606, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=72, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8659; Mature: 8659

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKANVFRRNCNMQGKVKWFNNEKGFGFIEMEGADDVFVHFSAIQGEGYKALEEGQEVSF
CCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEE
DITEGNRGPQAANVVKL
EECCCCCCCCCCEEECC
>Mature Secondary Structure
MKKANVFRRNCNMQGKVKWFNNEKGFGFIEMEGADDVFVHFSAIQGEGYKALEEGQEVSF
CCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEE
DITEGNRGPQAANVVKL
EECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631682 [H]