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The map label for this gene is ysfB [H]

Identifier: 118476871

GI number: 118476871

Start: 1317597

End: 1318712

Strand: Reverse

Name: ysfB [H]

Synonym: BALH_1160

Alternate gene names: 118476871

Gene position: 1318712-1317597 (Counterclockwise)

Preceding gene: 118476881

Following gene: 118476870

Centisome position: 25.08

GC content: 33.96

Gene sequence:

>1116_bases
ATGCTTTTTCCTGATTTAGCGAATAAAATTGTACGAGAAGTACGCAGACTAATTAAAGAAAATATTATTATCATTAATAT
ACAAGGCGTTATTATCGCAAGTACAGATATAGAAAGAATCGGTCAATTTCATGAAGGCGCACTCCGCTGTGCGAAACAAA
AGAAAACTGTCATTATTACAAAAGAAGATGAACGACGTTTGCAAGGCGTAAAGGCGGGTATGAATCTCCCTTTACTATTC
CATGATGAAGTAATTGGTGTCATTGGAATTACAGGGGAACCTGAAAATATTTCCCAATACGGAGAAATATTACGTAAAAT
GACCGAACTACTCATTCACGAAAACTACTTTTTAGAACAACTAGAACTTGAACACCGTTCTTATGAAGCATTTGTCTTTG
ATTGGCTCCAAAATACAGACTGGTCTCCAAGCTTTCTCGATCGTGCCAAAACACTTGGTATTGATTTATATAAGAAGAAA
CAACTTATTTTGTTCTCTATCGATAAAAATGACACGATGCTTCAGCGTAAAATTTGGCAACACGTACGCAATCTATTAAC
AAAGGAGCATCTATTTGTTCGCTGGGGAAATGATCGATTCATTTTATTTACAGCGATGAGCTCTAAAGAGCAAACATATC
AATTTTTAAAACGATTAAAACAAGACTGTGAAACTTTATTTTCTATTCCTTTATATATCGGGATTGGACAATCCGTTACG
CCAAGCAATATGAACTTATCATACGAACAAGCATTACAAGCTCTTTCCGTATCACTTGAAACAAAAAAAATTGTATTCAA
TGAGGATTTACGTTTAGAAATGTGCTTACAAGATATTTCTGCTGAAACGCGGGAACAGTTTCTAAAGCGCACCATCGAAA
ACTTACTATCATCACCTGAGCTTATGCACACTTTACGTTTATTTATCGATTATAACCAATCTTATAAACAAACAGCGCAG
CAATTACATATACACATTAACACATTGCATTACAGACTTAAAAAGATTGAGGAGTATACAGGACTTGATCCAAAGCAATT
CAAAGACTTAAATATTTTATACTTCTCGCTCCTCTTATTAGATAATCAAACAAAAAAGAACGATAAAAATGATTAA

Upstream 100 bases:

>100_bases
TGTAAAATAACAAATAAATGTGTGGAAAGTGTGAAATTTCCCTTTCCTACTTCATTTACATATATAATGTACAACAAATA
GAATTTGAGGTGTACCAATT

Downstream 100 bases:

>100_bases
TCTTTAGATGATTATACATAGAAAGAATCCCCCGACTTTTTTATCATTATAATGAAAGCACTGTGACAACGTTTTTTATT
ATGACTCATTACGTTAACAG

Product: CdaR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDKNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLETKKIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPELMHTLRLFIDYNQSYKQTAQ
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNQTKKNDKND

Sequences:

>Translated_371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDKNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLETKKIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPELMHTLRLFIDYNQSYKQTAQ
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNQTKKNDKND
>Mature_371_residues
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIITKEDERRLQGVKAGMNLPLLF
HDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQLELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKK
QLILFSIDKNDTMLQRKIWQHVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
PSNMNLSYEQALQALSVSLETKKIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPELMHTLRLFIDYNQSYKQTAQ
QLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLLDNQTKKNDKND

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=376, Percent_Identity=30.3191489361702, Blast_Score=165, Evalue=4e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 43685; Mature: 43685

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLQGVKAGMNLPLLFHDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQ
CCHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKKQLILFSIDKNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCEEEEEEECCCCHHHHHHHHH
HVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCC
PSNMNLSYEQALQALSVSLETKKIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPE
CCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH
LMHTLRLFIDYNQSYKQTAQQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNQTKKNDKND
CCCCCCCCCCC
>Mature Secondary Structure
MLFPDLANKIVREVRRLIKENIIIINIQGVIIASTDIERIGQFHEGALRCAKQKKTVIIT
CCCHHHHHHHHHHHHHHHHCCEEEEEECEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE
KEDERRLQGVKAGMNLPLLFHDEVIGVIGITGEPENISQYGEILRKMTELLIHENYFLEQ
CCHHHHHHHHHCCCCCCEEEECCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LELEHRSYEAFVFDWLQNTDWSPSFLDRAKTLGIDLYKKKQLILFSIDKNDTMLQRKIWQ
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEECCEEEEEEECCCCHHHHHHHHH
HVRNLLTKEHLFVRWGNDRFILFTAMSSKEQTYQFLKRLKQDCETLFSIPLYIGIGQSVT
HHHHHHHHCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHEEECCCCCC
PSNMNLSYEQALQALSVSLETKKIVFNEDLRLEMCLQDISAETREQFLKRTIENLLSSPE
CCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCHH
LMHTLRLFIDYNQSYKQTAQQLHIHINTLHYRLKKIEEYTGLDPKQFKDLNILYFSLLLL
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHH
DNQTKKNDKND
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]