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The map label for this gene is xerD [H]

Identifier: 118476848

GI number: 118476848

Start: 1291216

End: 1292364

Strand: Reverse

Name: xerD [H]

Synonym: BALH_1136

Alternate gene names: 118476848

Gene position: 1292364-1291216 (Counterclockwise)

Preceding gene: 118476849

Following gene: 118476843

Centisome position: 24.58

GC content: 32.11

Gene sequence:

>1149_bases
GTGTTAAGGTTTTATCCTTTGCACATCAAAAATCACCCTAGTGTTGCGGTCATTTACTTTTTAGGGTGCAAGTCATTCAC
GTCTTCTTATACGGTAAACCAAATTACCGATATAGGAAGGCGTTTTATTTTGTCCAGAACAGGTAAAAGAGGTAAAGCAA
AGTTAAGTCGTACAAGTATTGAGGTTACACAGATTGAAACTTACACGTTCCAAGAGCTATTTAACATTTATATGTTTGCA
AAAGAAGCAGAAGGTCTTGTAAGAAAAACCCTCGAAAATAAGAAAGGATATTTCTTAGTATTTCACCGCTATTTAGAAGA
ACATCATGAAGATGTAACACCTAATACACTCGATACAAATACCATTAGAGAGTTTTTATATTACTTGAAGAATGATCACG
TTAAGCATAAAAATAACCATTGCGTTAAGGAAAAATATAAATCCGTTGGTGTTTCAGTTTCTTATATAAATACTATCATG
AAACATATGAGAGCATTCTACAACTTCCTCGTTGAAGAGGAATATGTACAATTAAATCCTTTTACAAAAATTAAGTCATT
AAAAGAAGTACAAGATAATATAGAGGCATTATCCGTTGATCAATTAAAAACCTTACTTAAACAGCCAAATCAACGAACAT
ACGCAGGATTTAGGGACTATGTATTAATGATGTTACTTGCTGATACAGGTATGCGAATTAGTGAAGCGTTAAACCTTCAA
CAAGAGGATATTGATTTTAAAACGAATGTGATTGAATTAAAAGGTACTAACACAAAAAACCGTAAAACTCGATATGTACC
TATTTCCCAAAAGACTAGTAAGCTACTGCGTGAATTACTAGTTGAAATTGAGGAATTTGATACCCTCCATATATTTGCTA
CTGTTTATGGAAATACCATTGATCCTGCACGTTTCAGACAGAGATTAAAAATGTATGGTAATAATTCTGGAATTAAAGGA
GTAAGAGTCTCTCCTCACACTTTCAGACATACATTTGCAAAGTATTATTTGCTTAATAATGGTGATGTGATGACTCTGCA
AAAAATTTTGGGGCATTCCTCAATTGAAATGGTTAGAAAATACATTAATATGACAAGCAAAGATATTGTAGTTCAACACA
ATAAGTATAGTCCAGTTAATAATTTATAA

Upstream 100 bases:

>100_bases
CTCAGCAGGGAGAGCGCCACCTTGACAGGGTGGAGGTCGTGAGTTCGAGCCTCTCCGGGGTCATTATTTACAAGAGAGCT
TACTCTACAAGGGTTTGTAA

Downstream 100 bases:

>100_bases
ATACAAATGAAAAAATCTGCAATAAACATAAGTTTGTTGCAGATTTAATAAAGATTTCTGTTGTTGTATAATTTAATACC
CTTTTCAAGTAATTATAATA

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLRFYPLHIKNHPSVAVIYFLGCKSFTSSYTVNQITDIGRRFILSRTGKRGKAKLSRTSIEVTQIETYTFQELFNIYMFA
KEAEGLVRKTLENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTIM
KHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQ
QEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLRELLVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKG
VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSPVNNL

Sequences:

>Translated_382_residues
MLRFYPLHIKNHPSVAVIYFLGCKSFTSSYTVNQITDIGRRFILSRTGKRGKAKLSRTSIEVTQIETYTFQELFNIYMFA
KEAEGLVRKTLENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTIM
KHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQ
QEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLRELLVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKG
VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSPVNNL
>Mature_382_residues
MLRFYPLHIKNHPSVAVIYFLGCKSFTSSYTVNQITDIGRRFILSRTGKRGKAKLSRTSIEVTQIETYTFQELFNIYMFA
KEAEGLVRKTLENKKGYFLVFHRYLEEHHEDVTPNTLDTNTIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTIM
KHMRAFYNFLVEEEYVQLNPFTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQ
QEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLRELLVEIEEFDTLHIFATVYGNTIDPARFRQRLKMYGNNSGIKG
VRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRKYINMTSKDIVVQHNKYSPVNNL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=227, Percent_Identity=26.431718061674, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1790244, Length=242, Percent_Identity=21.900826446281, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44793; Mature: 44793

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRFYPLHIKNHPSVAVIYFLGCKSFTSSYTVNQITDIGRRFILSRTGKRGKAKLSRTSI
CCEEEEEEECCCCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCEE
EVTQIETYTFQELFNIYMFAKEAEGLVRKTLENKKGYFLVFHRYLEEHHEDVTPNTLDTN
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHH
TIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTIMKHMRAFYNFLVEEEYVQLNP
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCC
FTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQ
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
QEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLRELLVEIEEFDTLHIFATVYGNTI
HHCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCC
DPARFRQRLKMYGNNSGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRK
CHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHEEEECCCCHHHHHHHHCCHHHHHHHH
YINMTSKDIVVQHNKYSPVNNL
HHCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure
MLRFYPLHIKNHPSVAVIYFLGCKSFTSSYTVNQITDIGRRFILSRTGKRGKAKLSRTSI
CCEEEEEEECCCCCEEEEEEECCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCEE
EVTQIETYTFQELFNIYMFAKEAEGLVRKTLENKKGYFLVFHRYLEEHHEDVTPNTLDTN
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCCCCCHH
TIREFLYYLKNDHVKHKNNHCVKEKYKSVGVSVSYINTIMKHMRAFYNFLVEEEYVQLNP
HHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEECCC
FTKIKSLKEVQDNIEALSVDQLKTLLKQPNQRTYAGFRDYVLMMLLADTGMRISEALNLQ
HHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCC
QEDIDFKTNVIELKGTNTKNRKTRYVPISQKTSKLLRELLVEIEEFDTLHIFATVYGNTI
HHCCCCCCEEEEEECCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCC
DPARFRQRLKMYGNNSGIKGVRVSPHTFRHTFAKYYLLNNGDVMTLQKILGHSSIEMVRK
CHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHEEEECCCCHHHHHHHHCCHHHHHHHH
YINMTSKDIVVQHNKYSPVNNL
HHCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA