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The map label for this gene is rbsB [H]

Identifier: 118476354

GI number: 118476354

Start: 707639

End: 708580

Strand: Direct

Name: rbsB [H]

Synonym: BALH_0612

Alternate gene names: 118476354

Gene position: 707639-708580 (Clockwise)

Preceding gene: 118476353

Following gene: 118476355

Centisome position: 13.46

GC content: 39.49

Gene sequence:

>942_bases
ATGGAGGGACAGTTTATGAAGAAATGGTTACTTATACTTGTTGCATGTATGATGGTCATTACTGCTGGTTGTTCAATGGA
ACCACCAGAATGGGCAAAGGATTCTAGCGATAAAGGTCGAAATAAAACTATTAAAGTTGGATTCTCTGTTTCAACTTTAA
ACAATCCATTTTTTGTAACTTTGAAAAAAGGGGCAGAAAAGAAAGCGAAAGAAAGCGGCATTGAATTGATTGCTGTTGAT
GCACAAAATGATGCAGCAAAGCAAACAAATGATGTTGAAGATTTAATTCAAAAAGGTGTCGATGTAGTTGTTATTAATCC
AACCGATTCAGATGCTGTTGCTTCAGCAGTAAGTGCGGCAAATGCAGCGAATGTCCCTGTTATTACAGTAGACCGCGTTG
CGAATTCAGGTAAAGTTGTTTCTCACATTGCCTCTAATAATATTGAAGGTGGTCAAATGGCTAGTGATTACATTCGTGAA
TTAGTCGGCGAAGGAGCAAACGTTGCTGAGTTAGAAGGAATCCCTGGTTCTTCTGCAGCTCGTGAACGTGGGAAAGGATT
CCATAACGTAGCCGATAAGTCTTTAAAAGTAGTTGCTAAACAAGCGGCTGATTTTGATAGAGCGAAAGGATTATCTGTTA
TGGAAAACATTTTGCAAGCAAATGGTGATATTAAAGCCGTGTTTGCCCATAACGACGAGATGGCATTAGGTGCACTTGAA
GCATTGAAGTCTGCTGGAAAAACAGATGTAGTCGTTGTTGGATTTGATGCAACAGAAGATGCTGTGAAAGCGGTTAATGA
TGGGCGCATGGCTGCAACTGTTGCTCAAAAACCGGAATTAATCGGAGAGAAGGCGATGCAAACAGCAAAAGAGATCACGC
AAGGCAAAAAAGTGGACAAATCTATTCCGATTGAATTAGAGCTTATTAAGAAAAATAAATAA

Upstream 100 bases:

>100_bases
ACGGTTTAAATTTATTAGGTGTATCTTCTTTCTTCCAACAAGTTGTAAAAGGACTTGTAATCTTACTAGCTGTATTAATT
GATCGCCGAAAAGAAGCGTA

Downstream 100 bases:

>100_bases
ATATAAAAATGAAAATTAGGAAGGAAGAATAACAAATGAAATTCTTTATTGATACAGCAAATATTAACGAAATTAAAGAG
GCAAATGCATTAGGCGTATT

Product: ribose ABC transporter periplasmic-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MEGQFMKKWLLILVACMMVITAGCSMEPPEWAKDSSDKGRNKTIKVGFSVSTLNNPFFVTLKKGAEKKAKESGIELIAVD
AQNDAAKQTNDVEDLIQKGVDVVVINPTDSDAVASAVSAANAANVPVITVDRVANSGKVVSHIASNNIEGGQMASDYIRE
LVGEGANVAELEGIPGSSAARERGKGFHNVADKSLKVVAKQAADFDRAKGLSVMENILQANGDIKAVFAHNDEMALGALE
ALKSAGKTDVVVVGFDATEDAVKAVNDGRMAATVAQKPELIGEKAMQTAKEITQGKKVDKSIPIELELIKKNK

Sequences:

>Translated_313_residues
MEGQFMKKWLLILVACMMVITAGCSMEPPEWAKDSSDKGRNKTIKVGFSVSTLNNPFFVTLKKGAEKKAKESGIELIAVD
AQNDAAKQTNDVEDLIQKGVDVVVINPTDSDAVASAVSAANAANVPVITVDRVANSGKVVSHIASNNIEGGQMASDYIRE
LVGEGANVAELEGIPGSSAARERGKGFHNVADKSLKVVAKQAADFDRAKGLSVMENILQANGDIKAVFAHNDEMALGALE
ALKSAGKTDVVVVGFDATEDAVKAVNDGRMAATVAQKPELIGEKAMQTAKEITQGKKVDKSIPIELELIKKNK
>Mature_313_residues
MEGQFMKKWLLILVACMMVITAGCSMEPPEWAKDSSDKGRNKTIKVGFSVSTLNNPFFVTLKKGAEKKAKESGIELIAVD
AQNDAAKQTNDVEDLIQKGVDVVVINPTDSDAVASAVSAANAANVPVITVDRVANSGKVVSHIASNNIEGGQMASDYIRE
LVGEGANVAELEGIPGSSAARERGKGFHNVADKSLKVVAKQAADFDRAKGLSVMENILQANGDIKAVFAHNDEMALGALE
ALKSAGKTDVVVVGFDATEDAVKAVNDGRMAATVAQKPELIGEKAMQTAKEITQGKKVDKSIPIELELIKKNK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=267, Percent_Identity=57.3033707865169, Blast_Score=309, Evalue=2e-85,
Organism=Escherichia coli, GI1790526, Length=269, Percent_Identity=34.9442379182156, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1790674, Length=279, Percent_Identity=31.1827956989247, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788473, Length=273, Percent_Identity=27.4725274725275, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1790194, Length=233, Percent_Identity=26.6094420600858, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789990, Length=264, Percent_Identity=27.6515151515151, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786540, Length=224, Percent_Identity=27.2321428571429, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787948, Length=282, Percent_Identity=24.468085106383, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33076; Mature: 33076

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGQFMKKWLLILVACMMVITAGCSMEPPEWAKDSSDKGRNKTIKVGFSVSTLNNPFFVT
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEE
LKKGAEKKAKESGIELIAVDAQNDAAKQTNDVEDLIQKGVDVVVINPTDSDAVASAVSAA
ECCCCHHHHHHCCCEEEEEECCCCCHHCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHC
NAANVPVITVDRVANSGKVVSHIASNNIEGGQMASDYIRELVGEGANVAELEGIPGSSAA
CCCCCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHH
RERGKGFHNVADKSLKVVAKQAADFDRAKGLSVMENILQANGDIKAVFAHNDEMALGALE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
ALKSAGKTDVVVVGFDATEDAVKAVNDGRMAATVAQKPELIGEKAMQTAKEITQGKKVDK
HHHHCCCCCEEEEECCCCHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHHHHHCCCCCCC
SIPIELELIKKNK
CCCEEEEEEECCC
>Mature Secondary Structure
MEGQFMKKWLLILVACMMVITAGCSMEPPEWAKDSSDKGRNKTIKVGFSVSTLNNPFFVT
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEE
LKKGAEKKAKESGIELIAVDAQNDAAKQTNDVEDLIQKGVDVVVINPTDSDAVASAVSAA
ECCCCHHHHHHCCCEEEEEECCCCCHHCCCCHHHHHHCCCCEEEECCCCCHHHHHHHHHC
NAANVPVITVDRVANSGKVVSHIASNNIEGGQMASDYIRELVGEGANVAELEGIPGSSAA
CCCCCCEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHH
RERGKGFHNVADKSLKVVAKQAADFDRAKGLSVMENILQANGDIKAVFAHNDEMALGALE
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
ALKSAGKTDVVVVGFDATEDAVKAVNDGRMAATVAQKPELIGEKAMQTAKEITQGKKVDK
HHHHCCCCCEEEEECCCCHHHHHHHCCCCEEEHHHHCHHHHHHHHHHHHHHHHCCCCCCC
SIPIELELIKKNK
CCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]