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The map label for this gene is rbsD [H]

Identifier: 118476351

GI number: 118476351

Start: 704803

End: 705198

Strand: Direct

Name: rbsD [H]

Synonym: BALH_0608

Alternate gene names: 118476351

Gene position: 704803-705198 (Clockwise)

Preceding gene: 118476350

Following gene: 118476352

Centisome position: 13.41

GC content: 36.62

Gene sequence:

>396_bases
ATGAAAAAGCACGGTGTATTAAATAGTGAGATTGCATCAGTCCTTGCTTCACTTGGGCATACGGATACGATTGTAATCGC
TGATTGCGGTTTACCAATTCCTGCCGGAGTAAAGAGAATTGATCTAGCTGTTGAAATAGGAAAACCTAGCTTTTTAGATG
TATTACAAGTGGTAGCGGATGATATGGCAATTGAAAAAGTGACGTTAGCAGAAGAAGTCATTAACAACAATGTGGAAGTA
AATAAAGAAATCGAGCTAAAATTAATAGAACCAGCGTTTGAATATGTATGTCATGAACAATTTAAAGAGCATACAAAGAA
AGCGAAAGCTATTATTCGTACAGGTGAGGCTACGCCTTATGCCAATGTAATTTTACATGCAGGCGTGATTTTTTAA

Upstream 100 bases:

>100_bases
GTTTTGCGAATATTGCTGGTGGTCTTTCTGTAACGAAGCTTGGGGCGCAAGGCGGTATGCCAACGAGAGATAAAGTGCGT
GAAGTGCAGGTGATTGTTGG

Downstream 100 bases:

>100_bases
TAAAGGGAAGTGATGGGAATGCGTATTGAAATGAAAAATATTTCAAAGGCGTTCAATGGCAATCCTGTTTTGAAGAATGC
ACAGTTTATGATTGAAACAG

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MKKHGVLNSEIASVLASLGHTDTIVIADCGLPIPAGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNVEV
NKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF

Sequences:

>Translated_131_residues
MKKHGVLNSEIASVLASLGHTDTIVIADCGLPIPAGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNVEV
NKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF
>Mature_131_residues
MKKHGVLNSEIASVLASLGHTDTIVIADCGLPIPAGVKRIDLAVEIGKPSFLDVLQVVADDMAIEKVTLAEEVINNNVEV
NKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPYANVILHAGVIF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=46.0431654676259, Blast_Score=131, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 14271; Mature: 14271

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKHGVLNSEIASVLASLGHTDTIVIADCGLPIPAGVKRIDLAVEIGKPSFLDVLQVVAD
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
DMAIEKVTLAEEVINNNVEVNKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANVILHAGVIF
HHHHHHCCCCC
>Mature Secondary Structure
MKKHGVLNSEIASVLASLGHTDTIVIADCGLPIPAGVKRIDLAVEIGKPSFLDVLQVVAD
CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHH
DMAIEKVTLAEEVINNNVEVNKEIELKLIEPAFEYVCHEQFKEHTKKAKAIIRTGEATPY
HHHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
ANVILHAGVIF
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA