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The map label for this gene is yrbD [H]

Identifier: 118476324

GI number: 118476324

Start: 676341

End: 677801

Strand: Direct

Name: yrbD [H]

Synonym: BALH_0579

Alternate gene names: 118476324

Gene position: 676341-677801 (Clockwise)

Preceding gene: 118476323

Following gene: 118476325

Centisome position: 12.87

GC content: 39.29

Gene sequence:

>1461_bases
TTGGAAGCTTTCGTAAATTGGTTAAATAATATTGTTTGGAGTCCAGCACTTGTTTATTTATGTTTAGGAGCAGGGTTATA
TTTTTCTATTCGAACGAGGTTTTTACAAGTAAGGCATGTAGGAGAAATGGTGAAGCTGACATTTAAAGGAGAAAAATCGG
AGGCTGGTGTTTCTTCATTCCAAGCGTTAGCACTTTCATTATCAGGACGTGTTGGGACAGGGAATATCGCTGGGGTAGCT
ACAGCGGTTGCCTTCGGTGGGCCAGGGGCTGTATTTTGGATGTGGGCAGTAGCCTTTTTAGGAGCAGGATCAGCTTATGT
AGAATCAACACTCGCGCAAATCTATAAGACAAAGCATCAAGGACAGTTTCGCGGTGGACCTGCTTATTACATTGAAAAAG
GTTTAGGGGTTAAATGGTATGCATTAGTATTCGTTGCAGCGACAATTCTTGCAACGGGGCTTTTACTACCAGGTGTGCAA
GCAAATAGTATTGCCGTAAGTTTAGAGACAGCTTTTGGAATTAACACTACATTATCAGGGGCTTTATTAGTTGTTGTATT
AGCTCTTATCATCTTCGGTGGAGTAAAGCGAATTGTTAACGTTGCACAAGTTGTCGTACCGTTTATGGCAGTTGGTTATA
TTTTAGTAGCTTGCGTTATTGTTGCTATGAATATTGAAAAATTGCCAGAAGCATTTATGTTAATTATAAGAAGTGCATTT
GCATTAGAAGCAGCATTTGGTGGTATTATCGGTTTAGCAATTTCTTGGGGAGTAAAACGTGGTATTTATTCTAATGAAGC
AGGGCAAGGAACTGGACCACATGCAGCAGCAGCAGCTGAAGTATCGCATCCAGCTAAGCAAGGCTTAGTGCAAGCATTTT
CCGTTTACATTGATACATTATTTGTTTGTTCAGCAACAGCATTTATGATGATCATTACAGGCATGTATAACGTATTTGAT
GCAAGCGGAAAAAACTTTATCGTAAATAAATTAAATGGTGCACAGCCAGGACCGGGATATACACAGGCAGCAGTAGAATC
TGTTTTCCCTGGATTTGGAAACGGTTTCGTTGCCATTTCGTTACTATTCTTTGCATTTACAACAATTATGGCATATTACT
ACATTGCAGAAACGAATATCGCGTACTTAAATCGTGAGAAAGACCGCCCTTGGTTGTCTATGGTACTAAAATTTGTCTTT
TTAGGTGCTGTATTCTACGGCTGTATAAAAACAGCAGCAACGGCATGGGCTTTAGGTGATATCGGTGTAGGAATTATGGC
ATGGGTAAATATCATTGCGATTTTACTATTACAAAAACCTGCATTAGTCGCATTAAAGGATTATGAAAAGCAGAAAAAAG
AAGGAAAAGATCCAGTATTCGATCCAGGGCCATTAGGCATTAAAAATGCTGATTTCTGGGAGCATGAGTACGGAAAAGAT
AAGAAAGAAGAAGTATCTTAA

Upstream 100 bases:

>100_bases
AAAATATGTTTGTTTTATTAAAATAATATTGTCATAGATTCGGTATACACTTATAATTTTTATATATTCTGAATATTCTT
GATAAAAAGGAGGGGGAATA

Downstream 100 bases:

>100_bases
CTTAATAGAATAGAAATGAAAAAGCAAAGGGAAAATGCCTTTGCTTTTTTTTATGGACAAAATGAGGCTGGAAGTTATTT
TTTTGCCTATTTTTGAATAT

Product: sodium/alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 486

Protein sequence:

>486_residues
MEAFVNWLNNIVWSPALVYLCLGAGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQ
ANSIAVSLETAFGINTTLSGALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNREKDRPWLSMVLKFVF
LGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGKD
KKEEVS

Sequences:

>Translated_486_residues
MEAFVNWLNNIVWSPALVYLCLGAGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQ
ANSIAVSLETAFGINTTLSGALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNREKDRPWLSMVLKFVF
LGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGKD
KKEEVS
>Mature_486_residues
MEAFVNWLNNIVWSPALVYLCLGAGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSFQALALSLSGRVGTGNIAGVA
TAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQGQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQ
ANSIAVSLETAFGINTTLSGALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTLFVCSATAFMMIITGMYNVFD
ASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAISLLFFAFTTIMAYYYIAETNIAYLNREKDRPWLSMVLKFVF
LGAVFYGCIKTAATAWALGDIGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGKD
KKEEVS

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=494, Percent_Identity=36.8421052631579, Blast_Score=290, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 52029; Mature: 52029

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAFVNWLNNIVWSPALVYLCLGAGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSF
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
QALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQ
HHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTTLSG
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCHHHHH
ALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
FVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAIS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
LLFFAFTTIMAYYYIAETNIAYLNREKDRPWLSMVLKFVFLGAVFYGCIKTAATAWALGD
HHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGKD
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCC
KKEEVS
CHHCCC
>Mature Secondary Structure
MEAFVNWLNNIVWSPALVYLCLGAGLYFSIRTRFLQVRHVGEMVKLTFKGEKSEAGVSSF
CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHH
QALALSLSGRVGTGNIAGVATAVAFGGPGAVFWMWAVAFLGAGSAYVESTLAQIYKTKHQ
HHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
GQFRGGPAYYIEKGLGVKWYALVFVAATILATGLLLPGVQANSIAVSLETAFGINTTLSG
CCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHCCCHHHHH
ALLVVVLALIIFGGVKRIVNVAQVVVPFMAVGYILVACVIVAMNIEKLPEAFMLIIRSAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEAAFGGIIGLAISWGVKRGIYSNEAGQGTGPHAAAAAEVSHPAKQGLVQAFSVYIDTL
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHH
FVCSATAFMMIITGMYNVFDASGKNFIVNKLNGAQPGPGYTQAAVESVFPGFGNGFVAIS
HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
LLFFAFTTIMAYYYIAETNIAYLNREKDRPWLSMVLKFVFLGAVFYGCIKTAATAWALGD
HHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGVGIMAWVNIIAILLLQKPALVALKDYEKQKKEGKDPVFDPGPLGIKNADFWEHEYGKD
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCCC
KKEEVS
CHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]