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The map label for this gene is yciR [C]

Identifier: 118476310

GI number: 118476310

Start: 654679

End: 656388

Strand: Direct

Name: yciR [C]

Synonym: BALH_0565

Alternate gene names: 118476310

Gene position: 654679-656388 (Clockwise)

Preceding gene: 118476309

Following gene: 118476312

Centisome position: 12.45

GC content: 35.38

Gene sequence:

>1710_bases
ATGCGCATGCTAGAACAAAGAGGTCATGCATTATATGAATCTTCATTGCGAGATTTAAAGTTAGCATTAGATGAGTCTTC
AATTGTTGCGATTACAGACCGAAAGGGTCTTATTACATATGTAAATGATAAGTTTTGTGAAATCTCCAAATATACAAGAG
AAGAGTTAATAGGGAAAGATCATCGTATTTTAAATTCAGGATATCACCCGAAAACATTTTTTCAAATGCTATGGAAGCGT
ATTTTGAGCGGAAAAGTATGGAGAGGTGAGATCCGAAATCAAGCAAAAGATGGTACATATTATTGGGTTAAAACAACAAT
TGTTCCATTTTTAAATGAAAAAGGAGAGCCATATCAATTTATCGCGATCCGAAATGATATTAGTAGTAGGAAAGAAGCAG
AACAGAGGTTGCGGTTAAGCGAAAGTCGTTATAGGGAGCTTGCTTATCATGATGCTTTAACGAGTTTACCGAACCGTTTA
CAATTAATAACGACTGTTAATGAGTTGATTGCAGATAAAAAAGAATTTGGTATGATTTATTTTGATTTGGATCGTTTTAA
ATTAGTAAACGATACGCTAGGTCATATGATAGGAGATTTACTTTTAAGCGAAGTTGCTTCACGGTTGCATTATGTGCTAG
GAGAGAAAGATGTTCTGGCTAGGCTGGGTGGCGACGAATTTGTGTTGTTAACAAAAAATCATACACAAGATGAGATGAGG
CAGCTAGCGACATCTGTGTTGTCATGCTTTCAGGCACCATTTATGCTTGAAGGTCATGAAGTATACATTTCAGCTAGTCT
AGGACTGTGCTCATATCCGCAAGATGGACAAGATGTAGAAACGCTATTGAAGAATTCGGATTTAGCTATGTATAGCGCGA
AAGAACAGGGGAGAAACGCCGCGTGTTTCTTTACAGATGAGTTACGTGCGAAAATAAATCGTAGAATGAAAATTGAATTT
GCTTTGCAAAAGGCGATTCGTGATGAAGAGTTAGAGGTGGCTTTGCAGCCTATTATTGATTTGAAAACGAAGAAATATAC
TGGTATCGAGGCTTTAGTACGTTGTACGACAGAAGAAGGACCGATTTCGCCAGGCGAATTTATTCCAGTAGCTGAAGAAT
GTGGACTTATTATAAAATTAGGGGACTGGGTATTAGAAAAGTCATGCCGCTTGTTTAAAACATTGCCGGAGTATGAAGAA
GGACTAAAGTTATCTGTGAATTTATCCATACAACAATTAATGCAAAAGCGTTTTATTATATCTGTACGTAGTATTTTAAG
GAGAACTGGTTTTCCTGCAAATCGTTTAATTTTAGAAATAACGGAAAGTATTGCTGTTCGTCATTTTGATTATATTATTG
CTACATTACAAGAATTAAGAAATATGGGTATTTTAATTGCTTTAGATGACTTCGGAACAGGCTATTCTTCCTTATATTAT
TTAAAACAACTACCGTTGGATATAGTAAAAATTGATCGTAATTTTATTCGTGAATTTCATTATGATCATGCACAACCAGA
GCGGACGATTGTAAAATCTGTTATTGAAATTGCCCATAGTTTAAATTTAGCAGTAGTTGCTGAAGGGGTAGAAACAGTAG
AGCAAGAAAGCCTATTAAAATCAATGGGTTGTGATTATGTACAAGGTTTTTATTATGCGAAACCTTTATCGGCAGCAGAG
TTAAAGGAAAAGTTAATTATAGACTTCTAA

Upstream 100 bases:

>100_bases
AAATGTGATTTATGTAAAGGACGATTATTAGGAAATGAAATATCTCTATTTCTATAAAAAGAAACAAGTTATGTTTTAGT
CAGATAGGAAGCAAGGAGAG

Downstream 100 bases:

>100_bases
TAAAAAAGAGAAGCCAGAAGCTTCTCCTTTTTTAATTCATTTTTTGTGAGTCTTTCATTAGTACAGGATAAAGAATAAGA
CCTAATACGAACAATCCGAT

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MRMLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHPKTFFQMLWKR
ILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRL
QLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMR
QLATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEF
ALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEEGPISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPEYEE
GLKLSVNLSIQQLMQKRFIISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYY
LKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSAAE
LKEKLIIDF

Sequences:

>Translated_569_residues
MRMLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHPKTFFQMLWKR
ILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRL
QLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMR
QLATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEF
ALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEEGPISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPEYEE
GLKLSVNLSIQQLMQKRFIISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYY
LKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSAAE
LKEKLIIDF
>Mature_569_residues
MRMLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKDHRILNSGYHPKTFFQMLWKR
ILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQFIAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRL
QLITTVNELIADKKEFGMIYFDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMR
QLATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNAACFFTDELRAKINRRMKIEF
ALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEEGPISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPEYEE
GLKLSVNLSIQQLMQKRFIISVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYY
LKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLKSMGCDYVQGFYYAKPLSAAE
LKEKLIIDF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=437, Percent_Identity=35.9267734553776, Blast_Score=291, Evalue=9e-80,
Organism=Escherichia coli, GI87081921, Length=495, Percent_Identity=32.1212121212121, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=30.2158273381295, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=36.8200836820084, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI1787055, Length=459, Percent_Identity=26.1437908496732, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1788849, Length=427, Percent_Identity=27.6346604215457, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081845, Length=268, Percent_Identity=33.2089552238806, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1788502, Length=263, Percent_Identity=32.6996197718631, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=32.3076923076923, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1786507, Length=249, Percent_Identity=29.3172690763052, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI87081743, Length=276, Percent_Identity=33.695652173913, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=26.3657957244656, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788381, Length=347, Percent_Identity=29.3948126801153, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=32.7485380116959, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=32.3353293413174, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=33.1360946745562, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87082007, Length=159, Percent_Identity=35.2201257861635, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787410, Length=236, Percent_Identity=28.3898305084746, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789453, Length=101, Percent_Identity=33.6633663366337, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=20.9821428571429, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=184, Percent_Identity=31.5217391304348, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI145693134, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1787262, Length=163, Percent_Identity=28.2208588957055, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=26.1363636363636, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787802, Length=127, Percent_Identity=29.1338582677165, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65392; Mature: 65392

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKD
CCCHHHHCHHHHHHHHHHHHHEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCC
HRILNSGYHPKTFFQMLWKRILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQF
HHHHCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEHHHHHCCCCCCEEE
IAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIY
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCEEE
FDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMR
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHH
QLATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNA
HHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCE
ACFFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEEG
EEEEHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCC
PISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPEYEEGLKLSVNLSIQQLMQKRFII
CCCCCCCCCCHHHCCEEEEECHHHHHHHHHHHHHCHHHHCCCEEEEECHHHHHHHHHHHH
SVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYY
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
LKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLK
HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHH
SMGCDYVQGFYYAKPLSAAELKEKLIIDF
HHCCHHHHCCHHCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRMLEQRGHALYESSLRDLKLALDESSIVAITDRKGLITYVNDKFCEISKYTREELIGKD
CCCHHHHCHHHHHHHHHHHHHEECCCCEEEEECCCCEEEEECCCHHHHHHHHHHHHCCCC
HRILNSGYHPKTFFQMLWKRILSGKVWRGEIRNQAKDGTYYWVKTTIVPFLNEKGEPYQF
HHHHCCCCCHHHHHHHHHHHHHCCCCEEHHHHCCCCCCEEEEEEEEHHHHHCCCCCCEEE
IAIRNDISSRKEAEQRLRLSESRYRELAYHDALTSLPNRLQLITTVNELIADKKEFGMIY
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHCCEEE
FDLDRFKLVNDTLGHMIGDLLLSEVASRLHYVLGEKDVLARLGGDEFVLLTKNHTQDEMR
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCCCHHHHH
QLATSVLSCFQAPFMLEGHEVYISASLGLCSYPQDGQDVETLLKNSDLAMYSAKEQGRNA
HHHHHHHHHHCCCCEEECCEEEEEECCCCCCCCCCCHHHHHHHCCCCCEEEEHHHCCCCE
ACFFTDELRAKINRRMKIEFALQKAIRDEELEVALQPIIDLKTKKYTGIEALVRCTTEEG
EEEEHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCC
PISPGEFIPVAEECGLIIKLGDWVLEKSCRLFKTLPEYEEGLKLSVNLSIQQLMQKRFII
CCCCCCCCCCHHHCCEEEEECHHHHHHHHHHHHHCHHHHCCCEEEEECHHHHHHHHHHHH
SVRSILRRTGFPANRLILEITESIAVRHFDYIIATLQELRNMGILIALDDFGTGYSSLYY
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
LKQLPLDIVKIDRNFIREFHYDHAQPERTIVKSVIEIAHSLNLAVVAEGVETVEQESLLK
HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHH
SMGCDYVQGFYYAKPLSAAELKEKLIIDF
HHCCHHHHCCHHCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]