Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
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Accession | NC_008600 |
Length | 5,257,091 |
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The map label for this gene is pflB [H]
Identifier: 118476197
GI number: 118476197
Start: 505453
End: 507717
Strand: Direct
Name: pflB [H]
Synonym: BALH_0446
Alternate gene names: 118476197
Gene position: 505453-507717 (Clockwise)
Preceding gene: 118476196
Following gene: 118476198
Centisome position: 9.61
GC content: 36.07
Gene sequence:
>2265_bases ATGGAGGAGATTAGGATGACTCAAGTATTAGAAAATGTTAAAAACGCATGGGAAAACTTTAAAGGTGAAAAATGGAAAGC AGAGATTGATGTTCGCGATTTCATTTTAAATAATGTAAACGTTTACGAGGGAGACGAATCTTTCTTAGCGGGAGCAACTG AAGCAACGAAACAACTTTGGGATCAAGTAATGGATTTAACAACGAAAGAACGTGAAAACGGTGGCGTTCTTGATATGGAT ACAAAAATTGTTTCTTCTATTACATCACATGAACCAGGATATTTAAATAAAGAGACTGAAAAAGTAGTTGGTTTCCAAAC TGATAAACCATTTAAACGTTCTTTACAACCATATGGTGGTATTCGTATGGCGGAACAAGCTTGTGAATCTTATGGATATG AAATGGATAAAGAGCTTAGTCGTATTTTTAGAGATTGGAGAAAAACTCATAACCAAGGTGTATTTGATGCTTATACACCA GAAATGAGAGCTGCTCGTAAATCAGGTGTTATTACGGGTCTTCCAGATGCATACGGACGTGGACGTATTATCGGTGACTA CCGCCGCGTAGCATTATATGGAGTAGATCATTTAATTGAAGCGAAGAAAACAGATTTAAATTTAACTGGTGGTGTAATGA GTGAAGATACAATGCGTTTACGCGAAGAGTTATCTGAGCAAATACGTGCACTTCAAGAGTTAAAACAAATGGCTGCTTCT CATGGCTTTGATATTTCTAAGCCAGCAACAACTGCTCAAGAAGCATTCCAATGGTTATACTTTGCATATCTTGCAGCAAT TAAAGAGCAAAACGGAGCTGCAATGAGTCTTGGACGTACTTCTACATTCTTAGATATTTATATTGAAAGAGATTTAGCAA ATGGTACTTTAACAGAAGAAGACGTACAAGAAATTGTGGATCACTTCATTATGAAATTACGTCTTGTGAAATTTGCAAGA ACACCTGATTATAATGAGTTATTCTCTGGTGACCCAACTTGGGTAACTGAGTCTATCGGTGGTATGGCATTAGATGGTCG TCCATTAGTAACAAAGAACTCATTCCGTTTCTTGCATACATTAGATAATTTAGGACCAGCTCCAGAACCAAACTTAACAG TTCTTTGGTCTAAACAATTACCACAGAACTTTAAAAACTACTGTGCGAAAATGTCTATTAAAACATCAGCAATTCAATAT GAAAATGATGACATTATGCGTGCTGACTACGGCGATGACTACGGAATTGCTTGTTGTGTATCTGCAATGAGAATCGGTAA ACAAATGCAATTCTTTGGCGCACGTGCAAACTTAGCAAAAGCATTACTATATGCGATTAACGGTGGTAAAGATGAAAAAT CTAAAGCACAAGTTGGTCCTGAGTATGCACCGATTACTTCTGAAGTATTAGATTATGAAGAAGTTATGCATAAGTTTGAT ATGACAATGGAATGGTTAGCGGGTCTATATTTAAACACATTAAATGTTATTCACTACATGCACGATAAATATAGCTACGA ACGTATTGAAATGGCACTTCATGATACAAATGTTCTTCGTACAATGGCAACAGGCATTGCGGGTCTATCTGTAGTAGCAG ACTCTTTAAGTGCAATTAAATATGCAAAAGTAAAACCAATTCGCGATGAAAACGGAATTGCAGTTGACTTTGAAATTGAA GGAGATTTCCCTAAATACGGTAACAATGATGACCGTGTAGATGAAATTGCTGTAAATCTTGTGAAAACATTTATGAATAA ACTTCGTAAACATAAAACATACAGAAATTCTGTTCATACAATGTCAATCTTAACAATCACATCTAACGTTGTATACGGTA AGAAAACTGGTAACACTCCAGATGGTCGCCGTACTGGAGAACCATTTGCACCAGGTGCGAACCCAATGCATGGACGTGAT ACAAAAGGTGCGTTAGCTTCATTATTATCTGTAGCTAAATTACCATATGAAGATGCACAAGATGGTATTTCTAATACATT CTCTATTATTCCAAAAGCGCTTGGTAAAGAGGATGAAGTACAAGTACGTAACTTAGTATCAATGCTTGATGGTTATGCAG TAAAAGAAGGCCATCACTTAAATATTAACGTATTTAATCGTGAAACATTAATGGATGCAATGGAACATCCTGAGAAATAT CCACAATTAACAATTCGCGTATCTGGTTACGCTGTAAACTTTATTAAATTAACTCGTGAACAACAAATCGATGTAATTAA CCGTACAATGCATGAAAGCATGTAA
Upstream 100 bases:
>100_bases CACAAACATGTCACAACTATTTCGTTCACTTTCGTAAAAAAGTAGTATTCTAAGTGTGTAAGCTGTTATATAAAAAATCT TAGTCCTGTACTAATCAAAA
Downstream 100 bases:
>100_bases ATGAAAAAAGTGTCCCTCTGCATTTTATAAACAGCAGAGGGAGGCTGTTTCAATAAAGGAGGAAGTAACATGGTAAAAGG AAGAATTCATTCTGTAGAGT
Product: formate acetyltransferase
Products: NA
Alternate protein names: Pyruvate formate-lyase [H]
Number of amino acids: Translated: 754; Mature: 754
Protein sequence:
>754_residues MEEIRMTQVLENVKNAWENFKGEKWKAEIDVRDFILNNVNVYEGDESFLAGATEATKQLWDQVMDLTTKERENGGVLDMD TKIVSSITSHEPGYLNKETEKVVGFQTDKPFKRSLQPYGGIRMAEQACESYGYEMDKELSRIFRDWRKTHNQGVFDAYTP EMRAARKSGVITGLPDAYGRGRIIGDYRRVALYGVDHLIEAKKTDLNLTGGVMSEDTMRLREELSEQIRALQELKQMAAS HGFDISKPATTAQEAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYIERDLANGTLTEEDVQEIVDHFIMKLRLVKFAR TPDYNELFSGDPTWVTESIGGMALDGRPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSKQLPQNFKNYCAKMSIKTSAIQY ENDDIMRADYGDDYGIACCVSAMRIGKQMQFFGARANLAKALLYAINGGKDEKSKAQVGPEYAPITSEVLDYEEVMHKFD MTMEWLAGLYLNTLNVIHYMHDKYSYERIEMALHDTNVLRTMATGIAGLSVVADSLSAIKYAKVKPIRDENGIAVDFEIE GDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILTITSNVVYGKKTGNTPDGRRTGEPFAPGANPMHGRD TKGALASLLSVAKLPYEDAQDGISNTFSIIPKALGKEDEVQVRNLVSMLDGYAVKEGHHLNINVFNRETLMDAMEHPEKY PQLTIRVSGYAVNFIKLTREQQIDVINRTMHESM
Sequences:
>Translated_754_residues MEEIRMTQVLENVKNAWENFKGEKWKAEIDVRDFILNNVNVYEGDESFLAGATEATKQLWDQVMDLTTKERENGGVLDMD TKIVSSITSHEPGYLNKETEKVVGFQTDKPFKRSLQPYGGIRMAEQACESYGYEMDKELSRIFRDWRKTHNQGVFDAYTP EMRAARKSGVITGLPDAYGRGRIIGDYRRVALYGVDHLIEAKKTDLNLTGGVMSEDTMRLREELSEQIRALQELKQMAAS HGFDISKPATTAQEAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYIERDLANGTLTEEDVQEIVDHFIMKLRLVKFAR TPDYNELFSGDPTWVTESIGGMALDGRPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSKQLPQNFKNYCAKMSIKTSAIQY ENDDIMRADYGDDYGIACCVSAMRIGKQMQFFGARANLAKALLYAINGGKDEKSKAQVGPEYAPITSEVLDYEEVMHKFD MTMEWLAGLYLNTLNVIHYMHDKYSYERIEMALHDTNVLRTMATGIAGLSVVADSLSAIKYAKVKPIRDENGIAVDFEIE GDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILTITSNVVYGKKTGNTPDGRRTGEPFAPGANPMHGRD TKGALASLLSVAKLPYEDAQDGISNTFSIIPKALGKEDEVQVRNLVSMLDGYAVKEGHHLNINVFNRETLMDAMEHPEKY PQLTIRVSGYAVNFIKLTREQQIDVINRTMHESM >Mature_754_residues MEEIRMTQVLENVKNAWENFKGEKWKAEIDVRDFILNNVNVYEGDESFLAGATEATKQLWDQVMDLTTKERENGGVLDMD TKIVSSITSHEPGYLNKETEKVVGFQTDKPFKRSLQPYGGIRMAEQACESYGYEMDKELSRIFRDWRKTHNQGVFDAYTP EMRAARKSGVITGLPDAYGRGRIIGDYRRVALYGVDHLIEAKKTDLNLTGGVMSEDTMRLREELSEQIRALQELKQMAAS HGFDISKPATTAQEAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYIERDLANGTLTEEDVQEIVDHFIMKLRLVKFAR TPDYNELFSGDPTWVTESIGGMALDGRPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSKQLPQNFKNYCAKMSIKTSAIQY ENDDIMRADYGDDYGIACCVSAMRIGKQMQFFGARANLAKALLYAINGGKDEKSKAQVGPEYAPITSEVLDYEEVMHKFD MTMEWLAGLYLNTLNVIHYMHDKYSYERIEMALHDTNVLRTMATGIAGLSVVADSLSAIKYAKVKPIRDENGIAVDFEIE GDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHTMSILTITSNVVYGKKTGNTPDGRRTGEPFAPGANPMHGRD TKGALASLLSVAKLPYEDAQDGISNTFSIIPKALGKEDEVQVRNLVSMLDGYAVKEGHHLNINVFNRETLMDAMEHPEKY PQLTIRVSGYAVNFIKLTREQQIDVINRTMHESM
Specific function: Glucose metabolism (nonoxidative conversion). [C]
COG id: COG1882
COG function: function code C; Pyruvate-formate lyase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 pyruvate formate lyase domain [H]
Homologues:
Organism=Escherichia coli, GI1787131, Length=760, Percent_Identity=65, Blast_Score=1053, Evalue=0.0, Organism=Escherichia coli, GI48994926, Length=751, Percent_Identity=65.5126498002663, Blast_Score=1027, Evalue=0.0, Organism=Escherichia coli, GI1787044, Length=574, Percent_Identity=27.3519163763066, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI1790388, Length=698, Percent_Identity=25.214899713467, Blast_Score=156, Evalue=5e-39, Organism=Escherichia coli, GI1788933, Length=61, Percent_Identity=70.4918032786885, Blast_Score=90, Evalue=5e-19,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005949 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR004184 [H]
Pfam domain/function: PF01228 Gly_radical; PF02901 PFL [H]
EC number: =2.3.1.54 [H]
Molecular weight: Translated: 85215; Mature: 85215
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEEIRMTQVLENVKNAWENFKGEKWKAEIDVRDFILNNVNVYEGDESFLAGATEATKQLW CCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCEEEECCHHHHCCHHHHHHHHH DQVMDLTTKERENGGVLDMDTKIVSSITSHEPGYLNKETEKVVGFQTDKPFKRSLQPYGG HHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHCCCCCCC IRMAEQACESYGYEMDKELSRIFRDWRKTHNQGVFDAYTPEMRAARKSGVITGLPDAYGR HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEECCCCCCCC GRIIGDYRRVALYGVDHLIEAKKTDLNLTGGVMSEDTMRLREELSEQIRALQELKQMAAS CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH HGFDISKPATTAQEAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYIERDLANGTLTEE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEECCCCCCCCHH DVQEIVDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGMALDGRPLVTKNSFRFLHT HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCEEECCCCEEECCCHHHHHH LDNLGPAPEPNLTVLWSKQLPQNFKNYCAKMSIKTSAIQYENDDIMRADYGDDYGIACCV HHHCCCCCCCCEEEEECHHCHHHHHHHHHHCCEEHHEEEECCCCEEECCCCCCCHHHHHH SAMRIGKQMQFFGARANLAKALLYAINGGKDEKSKAQVGPEYAPITSEVLDYEEVMHKFD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH MTMEWLAGLYLNTLNVIHYMHDKYSYERIEMALHDTNVLRTMATGIAGLSVVADSLSAIK HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAKVKPIRDENGIAVDFEIEGDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHT HHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE MSILTITSNVVYGKKTGNTPDGRRTGEPFAPGANPMHGRDTKGALASLLSVAKLPYEDAQ EEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH DGISNTFSIIPKALGKEDEVQVRNLVSMLDGYAVKEGHHLNINVFNRETLMDAMEHPEKY HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCEEEEEEECHHHHHHHHHCCCCC PQLTIRVSGYAVNFIKLTREQQIDVINRTMHESM CEEEEEEECEEEEEEEHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEEIRMTQVLENVKNAWENFKGEKWKAEIDVRDFILNNVNVYEGDESFLAGATEATKQLW CCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCEEEECCHHHHCCHHHHHHHHH DQVMDLTTKERENGGVLDMDTKIVSSITSHEPGYLNKETEKVVGFQTDKPFKRSLQPYGG HHHHHHHHHHCCCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHCCCCCCC IRMAEQACESYGYEMDKELSRIFRDWRKTHNQGVFDAYTPEMRAARKSGVITGLPDAYGR HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCEECCCCCCCC GRIIGDYRRVALYGVDHLIEAKKTDLNLTGGVMSEDTMRLREELSEQIRALQELKQMAAS CCEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH HGFDISKPATTAQEAFQWLYFAYLAAIKEQNGAAMSLGRTSTFLDIYIERDLANGTLTEE CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEEEEEEEECCCCCCCCHH DVQEIVDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGMALDGRPLVTKNSFRFLHT HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHCCCCEEECCCCEEECCCHHHHHH LDNLGPAPEPNLTVLWSKQLPQNFKNYCAKMSIKTSAIQYENDDIMRADYGDDYGIACCV HHHCCCCCCCCEEEEECHHCHHHHHHHHHHCCEEHHEEEECCCCEEECCCCCCCHHHHHH SAMRIGKQMQFFGARANLAKALLYAINGGKDEKSKAQVGPEYAPITSEVLDYEEVMHKFD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHH MTMEWLAGLYLNTLNVIHYMHDKYSYERIEMALHDTNVLRTMATGIAGLSVVADSLSAIK HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YAKVKPIRDENGIAVDFEIEGDFPKYGNNDDRVDEIAVNLVKTFMNKLRKHKTYRNSVHT HHHCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE MSILTITSNVVYGKKTGNTPDGRRTGEPFAPGANPMHGRDTKGALASLLSVAKLPYEDAQ EEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH DGISNTFSIIPKALGKEDEVQVRNLVSMLDGYAVKEGHHLNINVFNRETLMDAMEHPEKY HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEECCCCEEEEEEECHHHHHHHHHCCCCC PQLTIRVSGYAVNFIKLTREQQIDVINRTMHESM CEEEEEEECEEEEEEEHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA