| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is 117920060
Identifier: 117920060
GI number: 117920060
Start: 1894810
End: 1896678
Strand: Direct
Name: 117920060
Synonym: Shewana3_1612
Alternate gene names: NA
Gene position: 1894810-1896678 (Clockwise)
Preceding gene: 117920059
Following gene: 117920061
Centisome position: 38.11
GC content: 33.44
Gene sequence:
>1869_bases ATGAAGCGTACAGACTTTTATATATCCATGCTGTTAGCGCTCGTCCTCACTGCATGTGGTGGTGGCGATTCTTCCGATAA TAACGGCGATAATACCACGCCCCCATCTGCTTCGAATACGGCGCCTGTGATCAGTGGCTTATCAGACGTTTATCGAATGA TGGAGAGGGCAGAATTAACCATTCCCTTCAGTGTGACTGATGCAGAGGGAGATACTATTACACTATCAGTTATATCGTCT AATGCAGCAGTAACAGCCAGCCTCAGTGGTCAAAAGTTGCTGTTGGTTACAGCAGATATAAATCAGAATACTTCGACCAC GGTCACCTTGTCGGCTAGCGATGGTCAAACCAGTTCTAGCAAGTCGTTTATCCTAAATATTACAAAAAATAATGCACCAG TCATTAGTGGTCTCTCTGATACATATCAAATGGAGGAAAACGCACAGATCCTACTCCCCTTCACTGTAACTGATACGGAA GGTGATGAAATTACATTATCTACAGCCTCGTCTGATCCCATAATTACTATTAGTTACAATGGAAATTCTCAGATATTGTT GATAGCAGGAGAAATCACACGAGATATATCAGTAACTATTTCGCTGACGGCAAGTGATGGGAAATTGGCATCAACAAAAG AATTTATATTAACAGTCATGGATAAACCAGTGGTTCAACCGCCTGAACCAACAAAAGCTCCAGTTATTGCATGGTCATCA GAGTATGGGGATACGCCTACATTCAGCGTTAACGAAATGACAATGGAAGATTTTGTGTTTACTGTTTCTGATGAAGATAG TGATATTTCTCAGTTAAATATTACATACAAATTAAGATTTTTGACATCGTTAAATGATACTGATAAATCAAGTATCATTA AAAAATTCTCTATTGATATCGATAAAGTTTCTGGTGTAGCAAGAATGCGAATTCCTAATTCTACTTACGGAAAAATTCAA ATTGCAGTAACTTTAAATGTTGTTGATGAAAAATCTAATGAATCATCTTCTAAAGAACTTTTCTTAGCTTTTTCAAGCAA ATCATCAGTTTCATATTTAGACGATCTTTCTAATAAATATCCATTAGTCGGTGAAGAATCTCTGATTAATACATATTTTG TTAGTAGAGGCAATGAAATCAATAGTGCTATAAAAGTTTCGTATTCTATTCCAGAATATAACACAACGAATCCTTTAGGT ATTAAAGATTTAACTAAAAATAGCTTTTCTGTAACACCTATACCTAGTGTTGCTAATGAATTGGTTGCCATTAATATTTC ATTTGAAGATTCAACTGGTCTAACATCACAATTTTCGACTTTTATTAAACCAATTAATTCAGGAAGCATTGAATCAGTTT GGAATACTAAAATACAAGAACTTAAAAAGTTGGCTAACGCCTCAGCTGAGTATGAAAAAATAGCAAGCTATTTTAATGAT GAATTGTTTTTTTCTAAAAAAATCAACAGTGATATTTATTTAAGTAATAAAAGAAAAATTCAATTATCTGATGATGAAAT GATTACTAAGAAGATTGCTTTTTTAGAAAACAGATATCATTTTGTTCTTAATGGTTTACTTCAAAAAGATAAAGAAATTG AAGCTGAATTTAATGAAATAATAAACTACAATAGCTTAGAGGTTGAGGCTAGAATTGATGATCCATTTGAATCAATTGGC GTTCTAAATGAATTGGTTAATGATGTTTATCCATCAATGTATCTATTTAATCAAGAAAAATTAGTGTTGTTAAGTGATGG CTCATACTCAAGATTTATTGGTAACACTGCTTATGGTTCTTATGAAGTAAGTGGGAAATGGATTTTCTCTACACAGTATG ATTTTTTAAATGATATTTTGATGCATTAG
Upstream 100 bases:
>100_bases TTGACAACGGCGTATACGGAAAGCATGGAAAACTCAAGTTCCTTCTGTGGTGACTGAGTATTTAAGAGCAAAACCTACAA CATATCTGAGAGTATAGTCT
Downstream 100 bases:
>100_bases ATGTTAATTTAAATATGATTTATAGTTTTAATGTTGAATAATATAGTAAGGGATAAAAAATGAAAAAATCAAAACTGATG AAAATTTTGATTTTATCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 622; Mature: 622
Protein sequence:
>622_residues MKRTDFYISMLLALVLTACGGGDSSDNNGDNTTPPSASNTAPVISGLSDVYRMMERAELTIPFSVTDAEGDTITLSVISS NAAVTASLSGQKLLLVTADINQNTSTTVTLSASDGQTSSSKSFILNITKNNAPVISGLSDTYQMEENAQILLPFTVTDTE GDEITLSTASSDPIITISYNGNSQILLIAGEITRDISVTISLTASDGKLASTKEFILTVMDKPVVQPPEPTKAPVIAWSS EYGDTPTFSVNEMTMEDFVFTVSDEDSDISQLNITYKLRFLTSLNDTDKSSIIKKFSIDIDKVSGVARMRIPNSTYGKIQ IAVTLNVVDEKSNESSSKELFLAFSSKSSVSYLDDLSNKYPLVGEESLINTYFVSRGNEINSAIKVSYSIPEYNTTNPLG IKDLTKNSFSVTPIPSVANELVAINISFEDSTGLTSQFSTFIKPINSGSIESVWNTKIQELKKLANASAEYEKIASYFND ELFFSKKINSDIYLSNKRKIQLSDDEMITKKIAFLENRYHFVLNGLLQKDKEIEAEFNEIINYNSLEVEARIDDPFESIG VLNELVNDVYPSMYLFNQEKLVLLSDGSYSRFIGNTAYGSYEVSGKWIFSTQYDFLNDILMH
Sequences:
>Translated_622_residues MKRTDFYISMLLALVLTACGGGDSSDNNGDNTTPPSASNTAPVISGLSDVYRMMERAELTIPFSVTDAEGDTITLSVISS NAAVTASLSGQKLLLVTADINQNTSTTVTLSASDGQTSSSKSFILNITKNNAPVISGLSDTYQMEENAQILLPFTVTDTE GDEITLSTASSDPIITISYNGNSQILLIAGEITRDISVTISLTASDGKLASTKEFILTVMDKPVVQPPEPTKAPVIAWSS EYGDTPTFSVNEMTMEDFVFTVSDEDSDISQLNITYKLRFLTSLNDTDKSSIIKKFSIDIDKVSGVARMRIPNSTYGKIQ IAVTLNVVDEKSNESSSKELFLAFSSKSSVSYLDDLSNKYPLVGEESLINTYFVSRGNEINSAIKVSYSIPEYNTTNPLG IKDLTKNSFSVTPIPSVANELVAINISFEDSTGLTSQFSTFIKPINSGSIESVWNTKIQELKKLANASAEYEKIASYFND ELFFSKKINSDIYLSNKRKIQLSDDEMITKKIAFLENRYHFVLNGLLQKDKEIEAEFNEIINYNSLEVEARIDDPFESIG VLNELVNDVYPSMYLFNQEKLVLLSDGSYSRFIGNTAYGSYEVSGKWIFSTQYDFLNDILMH >Mature_622_residues MKRTDFYISMLLALVLTACGGGDSSDNNGDNTTPPSASNTAPVISGLSDVYRMMERAELTIPFSVTDAEGDTITLSVISS NAAVTASLSGQKLLLVTADINQNTSTTVTLSASDGQTSSSKSFILNITKNNAPVISGLSDTYQMEENAQILLPFTVTDTE GDEITLSTASSDPIITISYNGNSQILLIAGEITRDISVTISLTASDGKLASTKEFILTVMDKPVVQPPEPTKAPVIAWSS EYGDTPTFSVNEMTMEDFVFTVSDEDSDISQLNITYKLRFLTSLNDTDKSSIIKKFSIDIDKVSGVARMRIPNSTYGKIQ IAVTLNVVDEKSNESSSKELFLAFSSKSSVSYLDDLSNKYPLVGEESLINTYFVSRGNEINSAIKVSYSIPEYNTTNPLG IKDLTKNSFSVTPIPSVANELVAINISFEDSTGLTSQFSTFIKPINSGSIESVWNTKIQELKKLANASAEYEKIASYFND ELFFSKKINSDIYLSNKRKIQLSDDEMITKKIAFLENRYHFVLNGLLQKDKEIEAEFNEIINYNSLEVEARIDDPFESIG VLNELVNDVYPSMYLFNQEKLVLLSDGSYSRFIGNTAYGSYEVSGKWIFSTQYDFLNDILMH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68451; Mature: 68451
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTDFYISMLLALVLTACGGGDSSDNNGDNTTPPSASNTAPVISGLSDVYRMMERAELT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEE IPFSVTDAEGDTITLSVISSNAAVTASLSGQKLLLVTADINQNTSTTVTLSASDGQTSSS EEEEEECCCCCEEEEEEEECCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCC KSFILNITKNNAPVISGLSDTYQMEENAQILLPFTVTDTEGDEITLSTASSDPIITISYN CEEEEEEECCCCCEEECCCHHEEECCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEC GNSQILLIAGEITRDISVTISLTASDGKLASTKEFILTVMDKPVVQPPEPTKAPVIAWSS CCCEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHEEECCCCCCCCCCCCCCCEEEECC EYGDTPTFSVNEMTMEDFVFTVSDEDSDISQLNITYKLRFLTSLNDTDKSSIIKKFSIDI CCCCCCCEEECCEEEEHEEEEECCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHCCCH DKVSGVARMRIPNSTYGKIQIAVTLNVVDEKSNESSSKELFLAFSSKSSVSYLDDLSNKY HHHCCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHCCCCC PLVGEESLINTYFVSRGNEINSAIKVSYSIPEYNTTNPLGIKDLTKNSFSVTPIPSVANE CCCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCEEECCCCCCCCC LVAINISFEDSTGLTSQFSTFIKPINSGSIESVWNTKIQELKKLANASAEYEKIASYFND EEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC ELFFSKKINSDIYLSNKRKIQLSDDEMITKKIAFLENRYHFVLNGLLQKDKEIEAEFNEI CEEEEEECCCCEEECCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH INYNSLEVEARIDDPFESIGVLNELVNDVYPSMYLFNQEKLVLLSDGSYSRFIGNTAYGS CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCHHHCCCCCCCE YEVSGKWIFSTQYDFLNDILMH EEECCEEEEEECHHHHHHHHCC >Mature Secondary Structure MKRTDFYISMLLALVLTACGGGDSSDNNGDNTTPPSASNTAPVISGLSDVYRMMERAELT CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCEEE IPFSVTDAEGDTITLSVISSNAAVTASLSGQKLLLVTADINQNTSTTVTLSASDGQTSSS EEEEEECCCCCEEEEEEEECCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCCCC KSFILNITKNNAPVISGLSDTYQMEENAQILLPFTVTDTEGDEITLSTASSDPIITISYN CEEEEEEECCCCCEEECCCHHEEECCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEEC GNSQILLIAGEITRDISVTISLTASDGKLASTKEFILTVMDKPVVQPPEPTKAPVIAWSS CCCEEEEEECCCCCEEEEEEEEEECCCCCCCCHHHHEEECCCCCCCCCCCCCCCEEEECC EYGDTPTFSVNEMTMEDFVFTVSDEDSDISQLNITYKLRFLTSLNDTDKSSIIKKFSIDI CCCCCCCEEECCEEEEHEEEEECCCCCCCEEEEEEEEEEEEECCCCCCHHHHHHHHCCCH DKVSGVARMRIPNSTYGKIQIAVTLNVVDEKSNESSSKELFLAFSSKSSVSYLDDLSNKY HHHCCEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEECCCCHHHHHHCCCCC PLVGEESLINTYFVSRGNEINSAIKVSYSIPEYNTTNPLGIKDLTKNSFSVTPIPSVANE CCCCCHHHHEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCHHCCCCCEEECCCCCCCCC LVAINISFEDSTGLTSQFSTFIKPINSGSIESVWNTKIQELKKLANASAEYEKIASYFND EEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC ELFFSKKINSDIYLSNKRKIQLSDDEMITKKIAFLENRYHFVLNGLLQKDKEIEAEFNEI CEEEEEECCCCEEECCCEEEEECCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH INYNSLEVEARIDDPFESIGVLNELVNDVYPSMYLFNQEKLVLLSDGSYSRFIGNTAYGS CCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCCHHHCCCCCCCE YEVSGKWIFSTQYDFLNDILMH EEECCEEEEEECHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA