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The map label for this gene is yfmJ [H]

Identifier: 117920027

GI number: 117920027

Start: 1847909

End: 1848904

Strand: Direct

Name: yfmJ [H]

Synonym: Shewana3_1579

Alternate gene names: 117920027

Gene position: 1847909-1848904 (Clockwise)

Preceding gene: 117920025

Following gene: 117920028

Centisome position: 37.16

GC content: 47.09

Gene sequence:

>996_bases
ATGATAAGCAGTCAAATTCATTTAGCATCACGCCCTGTTGGTATGCCGACGCTGGCAAACTTTAAACAGGTCGAGGTGAC
GTTGCCCGCATTAAAAGCCGGTGAAGTGTTGGTTAAAAACACCTGGATGTCGGTCGATCCCTATATGCGTGGTCGTATGA
TGGATAGGGATTCCTACATTCCACCCTTCCAGATTGATGCGGTTATGGACGGCGGGGCAATAGGCGAAGTGATTGAGTCA
CTCAATCCACAATTCCCAGTAGGTTCAAAAGTGAGCCATATCAGCGGTTGGCGCAGCGCCTTTATTAGTGATGGGCAGGA
TCTCACCTTATTGCCTGCGGTGAATATTCCTGAGCAATACTTTTTAGGTGTTATCGGCATGCCCGGATTAACTGCTTGGG
TGGGGCTGATGCAAATCGCTAAGTTAAAACCAACGGATACTGTATTTGTTTCAGCCGCATCGGGTGCTGTCGGTATGGTT
GTCTGTCAAATCGCTAAGCTTAATGGCTGTAAAGTGATTGCTTCGGTTGGCTCGGATGAGAAGGCCGAATTGGTTCAAAG
TTTGGGCGTGGATGCCGTGATTAACTATAAAAAAGTCACTGATTTAACTCAGGCTTTGCGCGACGCGGCGCCTAATGGCA
TTGATGTGTATTTTGAGAATGTCGGCGGCGCTCATCTTGAAGCCGCGTTGAATGTGTTAAACGAATATGGCCGCATTCCT
GTATGTGGGATGATTGCCGATTACAATGCGCAGGCACCAGTCTCGGGGCCAAGTAATCTGTTAGCCATCAACACTAAAAA
GTTAACCATGCAGGGCTTTATTGTGATGGACTACTTCGATCAGTTTGAAGAATTCATCGCTCAAATGGCGCAGTGGCTGC
AAGCGGGTAAAGTGAAATCGCAAGAAACCGTTTATCATGGTTTAGACCAAGCTGCTGAGGCGTTTATCGGCCTGTTTGAA
GGCAAAAACAAAGGCAAAATGCTCGTTAAACTCTAA

Upstream 100 bases:

>100_bases
GTGCGCAAACTATTTGCAAGCTAATAAATTGGTTCATTGTCGACAACACATAACTCCACTCCCTGTTTGCTGTGTGTTCG
ACGTAATAGAGGTTAATCCC

Downstream 100 bases:

>100_bases
TCTTGCTAGGCTTTTATGACTAACCATTGAGGTGCAAAGGTGAAATCCGATGCACCTTGATGTCGTGGATCATGTCAAGC
GTGAGTCATGCTGCGGCGCA

Product: alcohol dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MISSQIHLASRPVGMPTLANFKQVEVTLPALKAGEVLVKNTWMSVDPYMRGRMMDRDSYIPPFQIDAVMDGGAIGEVIES
LNPQFPVGSKVSHISGWRSAFISDGQDLTLLPAVNIPEQYFLGVIGMPGLTAWVGLMQIAKLKPTDTVFVSAASGAVGMV
VCQIAKLNGCKVIASVGSDEKAELVQSLGVDAVINYKKVTDLTQALRDAAPNGIDVYFENVGGAHLEAALNVLNEYGRIP
VCGMIADYNAQAPVSGPSNLLAINTKKLTMQGFIVMDYFDQFEEFIAQMAQWLQAGKVKSQETVYHGLDQAAEAFIGLFE
GKNKGKMLVKL

Sequences:

>Translated_331_residues
MISSQIHLASRPVGMPTLANFKQVEVTLPALKAGEVLVKNTWMSVDPYMRGRMMDRDSYIPPFQIDAVMDGGAIGEVIES
LNPQFPVGSKVSHISGWRSAFISDGQDLTLLPAVNIPEQYFLGVIGMPGLTAWVGLMQIAKLKPTDTVFVSAASGAVGMV
VCQIAKLNGCKVIASVGSDEKAELVQSLGVDAVINYKKVTDLTQALRDAAPNGIDVYFENVGGAHLEAALNVLNEYGRIP
VCGMIADYNAQAPVSGPSNLLAINTKKLTMQGFIVMDYFDQFEEFIAQMAQWLQAGKVKSQETVYHGLDQAAEAFIGLFE
GKNKGKMLVKL
>Mature_331_residues
MISSQIHLASRPVGMPTLANFKQVEVTLPALKAGEVLVKNTWMSVDPYMRGRMMDRDSYIPPFQIDAVMDGGAIGEVIES
LNPQFPVGSKVSHISGWRSAFISDGQDLTLLPAVNIPEQYFLGVIGMPGLTAWVGLMQIAKLKPTDTVFVSAASGAVGMV
VCQIAKLNGCKVIASVGSDEKAELVQSLGVDAVINYKKVTDLTQALRDAAPNGIDVYFENVGGAHLEAALNVLNEYGRIP
VCGMIADYNAQAPVSGPSNLLAINTKKLTMQGFIVMDYFDQFEEFIAQMAQWLQAGKVKSQETVYHGLDQAAEAFIGLFE
GKNKGKMLVKL

Specific function: Putative quinone oxidoreductase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=330, Percent_Identity=39.3939393939394, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI226059133, Length=330, Percent_Identity=39.3939393939394, Blast_Score=229, Evalue=3e-60,
Organism=Homo sapiens, GI226246682, Length=344, Percent_Identity=39.2441860465116, Blast_Score=215, Evalue=4e-56,
Organism=Homo sapiens, GI226246680, Length=344, Percent_Identity=39.2441860465116, Blast_Score=215, Evalue=4e-56,
Organism=Homo sapiens, GI22748929, Length=344, Percent_Identity=39.2441860465116, Blast_Score=215, Evalue=4e-56,
Organism=Homo sapiens, GI226056130, Length=302, Percent_Identity=39.4039735099338, Blast_Score=204, Evalue=8e-53,
Organism=Homo sapiens, GI28557745, Length=340, Percent_Identity=29.7058823529412, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI194239674, Length=334, Percent_Identity=24.8502994011976, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI13236495, Length=334, Percent_Identity=24.8502994011976, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI197927207, Length=199, Percent_Identity=25.1256281407035, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI41872631, Length=210, Percent_Identity=26.1904761904762, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI22538446, Length=251, Percent_Identity=25.4980079681275, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI22538444, Length=251, Percent_Identity=25.4980079681275, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI226510941, Length=330, Percent_Identity=41.2121212121212, Blast_Score=256, Evalue=1e-69,
Organism=Escherichia coli, GI1790485, Length=156, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI133901710, Length=336, Percent_Identity=33.3333333333333, Blast_Score=177, Evalue=9e-45,
Organism=Caenorhabditis elegans, GI133901712, Length=336, Percent_Identity=33.3333333333333, Blast_Score=176, Evalue=1e-44,
Organism=Caenorhabditis elegans, GI17507255, Length=252, Percent_Identity=26.984126984127, Blast_Score=75, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6323504, Length=330, Percent_Identity=29.6969696969697, Blast_Score=115, Evalue=9e-27,
Organism=Saccharomyces cerevisiae, GI6319520, Length=218, Percent_Identity=28.8990825688073, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35705; Mature: 35705

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSQIHLASRPVGMPTLANFKQVEVTLPALKAGEVLVKNTWMSVDPYMRGRMMDRDSYI
CCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCHHHHCEECCCCCCC
PPFQIDAVMDGGAIGEVIESLNPQFPVGSKVSHISGWRSAFISDGQDLTLLPAVNIPEQY
CCEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
FLGVIGMPGLTAWVGLMQIAKLKPTDTVFVSAASGAVGMVVCQIAKLNGCKVIASVGSDE
HHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCH
KAELVQSLGVDAVINYKKVTDLTQALRDAAPNGIDVYFENVGGAHLEAALNVLNEYGRIP
HHHHHHHCCCCCEECHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
VCGMIADYNAQAPVSGPSNLLAINTKKLTMQGFIVMDYFDQFEEFIAQMAQWLQAGKVKS
EEEEEECCCCCCCCCCCCCEEEEECEEEEEECEEEHHHHHHHHHHHHHHHHHHHHCCCCC
QETVYHGLDQAAEAFIGLFEGKNKGKMLVKL
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
>Mature Secondary Structure
MISSQIHLASRPVGMPTLANFKQVEVTLPALKAGEVLVKNTWMSVDPYMRGRMMDRDSYI
CCCCCEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCHHHHCEECCCCCCC
PPFQIDAVMDGGAIGEVIESLNPQFPVGSKVSHISGWRSAFISDGQDLTLLPAVNIPEQY
CCEEEEEEECCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
FLGVIGMPGLTAWVGLMQIAKLKPTDTVFVSAASGAVGMVVCQIAKLNGCKVIASVGSDE
HHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCH
KAELVQSLGVDAVINYKKVTDLTQALRDAAPNGIDVYFENVGGAHLEAALNVLNEYGRIP
HHHHHHHCCCCCEECHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
VCGMIADYNAQAPVSGPSNLLAINTKKLTMQGFIVMDYFDQFEEFIAQMAQWLQAGKVKS
EEEEEECCCCCCCCCCCCCEEEEECEEEEEECEEEHHHHHHHHHHHHHHHHHHHHCCCCC
QETVYHGLDQAAEAFIGLFEGKNKGKMLVKL
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]