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The map label for this gene is vqsM [H]

Identifier: 117919979

GI number: 117919979

Start: 1782874

End: 1783905

Strand: Direct

Name: vqsM [H]

Synonym: Shewana3_1531

Alternate gene names: 117919979

Gene position: 1782874-1783905 (Clockwise)

Preceding gene: 117919978

Following gene: 117919982

Centisome position: 35.86

GC content: 49.13

Gene sequence:

>1032_bases
ATGTTACAGCGCGTCGACTACAAGACGAACCTGATGGTTGGTGATCAAACCTATCCCGCATTTGAGCTACGTAATATTCT
CGATTTTATTGCCTCGCAGTTAGGCGAAAACGCCTTACAGCAAGTCTGTGAGCATATCGGCGTTGGCCAAGCAGAGCTCA
ATCATTGCCAGTTTGTGTTTGTGTGGCAGGTGGAATATGCAATGGAGTTTTTACGCTTGCAGGGCGGCGACCCCGATATC
GGCACTAAATTAGGCCTGAGCTATCGGGTGAGTAGTTTAGATGTGCTCTTGCCCCATCTCGCACAGCTAACGTCTTTACA
GGCCTGCCTGCAGTTTGTGGTCAATCATCCCCAACTGGTTGGCAGTTTTACCGATACCTTAGTGCGCCTCGAGGAAGACT
GTGTTTGCATTCGTTGGCTCAATACTGGCCGTATCGACCAAGCACAATATGGATTTCAATTTCTGCACAGCATAGGTTCG
CTGTTAGGGCTTGCCAGAGAGCTCACGGGGGAGGCGATAACGCTTAGGCAAATCCATTTGGCGGAACCTGTCCGTGACAG
CTATTTTTTAAATGAAGCCACCGGTGCTCAAGTGCAGTTTAATTGCGAATATTACGAATGGAGCATTTCCCTTAACCATC
TTGCGCTTGCTATCCAGTATCCTTTCCCTGCCTACGCCGAAAAGGTCACTGCTGTCTCGACCACATCCTTTATCGAAACC
GTGCTGGCGGCAATCAACGAACATTTTCCCCAAGTGCTCCATTTAGATGATATGGCGGCGCAACTGCATATGAGCGATCG
CAGTTTTCGGCGCAAGCTGGCACAGCTTGGTTCGAGTTATCAACGTTTAGTCGATCAGGTGCGTTGCCAAAGGGCGGTCG
AGTTGATTTTAGCAAGCGAATTGGATATTGAGGCGATTGCCGAGACCCTAGGCTACAGCGATGTTAGCCATTTTCGTCAA
TCCTTTAAGCATTGGATTGGCCATCCGCCTGGATATTTTAGCCGGCTAAATGGTGGTGAAAGGGCTAACTAA

Upstream 100 bases:

>100_bases
AACATTAAGTTTGGTTTAAGACTATTCAAAATAAGCGAGATCTTATACAACTAATCACCTAGGGAATTAAAAGCTGAACA
AATCATATTAAGGATTTTCC

Downstream 100 bases:

>100_bases
ATAAGGCGATTGACTGAACTTTGCCCTTGAAGCCGCAGTTTTGCCGTTAAAACCATAGTTAAATCATTTGGCGGTTGGTT
GGAGATACAGTCATATTGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Virulence and quorum sensing modulator protein [H]

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGQAELNHCQFVFVWQVEYAMEFLRLQGGDPDI
GTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLVGSFTDTLVRLEEDCVCIRWLNTGRIDQAQYGFQFLHSIGS
LLGLARELTGEAITLRQIHLAEPVRDSYFLNEATGAQVQFNCEYYEWSISLNHLALAIQYPFPAYAEKVTAVSTTSFIET
VLAAINEHFPQVLHLDDMAAQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILASELDIEAIAETLGYSDVSHFRQ
SFKHWIGHPPGYFSRLNGGERAN

Sequences:

>Translated_343_residues
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGQAELNHCQFVFVWQVEYAMEFLRLQGGDPDI
GTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLVGSFTDTLVRLEEDCVCIRWLNTGRIDQAQYGFQFLHSIGS
LLGLARELTGEAITLRQIHLAEPVRDSYFLNEATGAQVQFNCEYYEWSISLNHLALAIQYPFPAYAEKVTAVSTTSFIET
VLAAINEHFPQVLHLDDMAAQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILASELDIEAIAETLGYSDVSHFRQ
SFKHWIGHPPGYFSRLNGGERAN
>Mature_343_residues
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGQAELNHCQFVFVWQVEYAMEFLRLQGGDPDI
GTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLVGSFTDTLVRLEEDCVCIRWLNTGRIDQAQYGFQFLHSIGS
LLGLARELTGEAITLRQIHLAEPVRDSYFLNEATGAQVQFNCEYYEWSISLNHLALAIQYPFPAYAEKVTAVSTTSFIET
VLAAINEHFPQVLHLDDMAAQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILASELDIEAIAETLGYSDVSHFRQ
SFKHWIGHPPGYFSRLNGGERAN

Specific function: Transcriptional regulator involved in both the repression (at least 99 genes, such as mexR and algU) and in the activation (at least 203 genes, such as mvfR, rsaL, vqsR and rpoS) of regulatory or putative regulatory proteins which are implicated in quorum

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38801; Mature: 38801

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGQAELNHCQFVF
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHCCEEEEE
VWQVEYAMEFLRLQGGDPDIGTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLV
EEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GSFTDTLVRLEEDCVCIRWLNTGRIDQAQYGFQFLHSIGSLLGLARELTGEAITLRQIHL
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
AEPVRDSYFLNEATGAQVQFNCEYYEWSISLNHLALAIQYPFPAYAEKVTAVSTTSFIET
HCCHHHHHEECCCCCCEEEEEEEEEEEEEEECEEEEEEECCCCHHHHHHHHHHHHHHHHH
VLAAINEHFPQVLHLDDMAAQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILASE
HHHHHHHHCHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDIEAIAETLGYSDVSHFRQSFKHWIGHPPGYFSRLNGGERAN
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MLQRVDYKTNLMVGDQTYPAFELRNILDFIASQLGENALQQVCEHIGVGQAELNHCQFVF
CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHCCEEEEE
VWQVEYAMEFLRLQGGDPDIGTKLGLSYRVSSLDVLLPHLAQLTSLQACLQFVVNHPQLV
EEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
GSFTDTLVRLEEDCVCIRWLNTGRIDQAQYGFQFLHSIGSLLGLARELTGEAITLRQIHL
HHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHH
AEPVRDSYFLNEATGAQVQFNCEYYEWSISLNHLALAIQYPFPAYAEKVTAVSTTSFIET
HCCHHHHHEECCCCCCEEEEEEEEEEEEEEECEEEEEEECCCCHHHHHHHHHHHHHHHHH
VLAAINEHFPQVLHLDDMAAQLHMSDRSFRRKLAQLGSSYQRLVDQVRCQRAVELILASE
HHHHHHHHCHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LDIEAIAETLGYSDVSHFRQSFKHWIGHPPGYFSRLNGGERAN
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]