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The map label for this gene is secD [H]

Identifier: 117919885

GI number: 117919885

Start: 1665798

End: 1667648

Strand: Direct

Name: secD [H]

Synonym: Shewana3_1437

Alternate gene names: 117919885

Gene position: 1665798-1667648 (Clockwise)

Preceding gene: 117919884

Following gene: 117919886

Centisome position: 33.5

GC content: 51.11

Gene sequence:

>1851_bases
GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGGTGCTCGTCATCGCCATAGGTTGTTTCTATGCCGTACCTAA
CCTGTTCGGTGAAGATCATGCGGTGCAAGTAGTGGCGACTCGAGGTGCTGAAGTCACGGCATCTACCCAAGCCAGAGTGA
ACGAGCTGTTAGCCAGTAAGGGCATTGCGGTAAAACGCTCTGAGCTTGAAAAAGGTCAATTGTTGGTTCGCGTACAAAAC
GCGGATCAACAGTTGCTGGCCAAGGAAACCATCGCCGAAGACTTAGGTGACAAGTTTACTGTGGCACTCAACCTTGCCCC
TGCCACCCCGCAGTGGCTCGAGTCTATGGGCGGTAGCCCAATGAAACTCGGTCTGGACCTTCGTGGTGGTGTGCACTTCT
TAATGGAAGTGGACATGGGCGAAGCCATCCGCAAGATGGAAGAGGCCAAAGTGGCCGATTTCCGTTCTCAATTACGTGAA
GAAAAAATCCGTTACGCGGGCATTCGCAACAATGCGCAAGGTATCGAGATTAAATTCCGTGATGCCGAAAGTTTAGCCAG
TGCAGAACGTTTCTTAAAATCTCGCAGCAACGATATGGTGTTCAGCGATGTGAGCAAGGGTGAAGACTTTGCCCTGCAAG
CCGTCATGAGCGAAACCTATCTTAAGCAGATTAAAGAAGAAGCGCTGCAGCAAAACATTACCACTATCCGTAACCGTGTG
AACGAGTTAGGGGTAGCTGAGCCGGTGGTTCAACGCCAAGGTGCTGAGCGTATTATCGTTGAGCTGCCAGGTGTACAAGA
CACTGCCCGCGCCAAGGAAATCTTAGGTGCGACGGCATCGATTGAATTCCACATGGTGGACGATAAGGCTGACCCCAATG
CGGCGCAATCTGGCCGTGTACCTGCGGGTTCTGAGGTGTATCAACGCCGTGAAGGCGGTCAAGTGGTACTGAAGAAGGAA
GTGATGCTAACGGGTGATCATATCACTGGCGCACAACCTAGCTTCGACCAATATAGCCGTCCACAGGTGAGCATCAACCT
CGATGCTAAAGGCGGTACCATTTTCTCTAACGTGACTAAGGACAATATCGGTAAACCGATGGCGACCTTGTTCATCGAAT
ATAAAGACAGCGGTGAGCGTAACGCCGATGGCAGCGTCAAGATGCAGAAAATCCAAGAAGTGATTTCTGTGGCGACCATT
CAAGCGCGTTTAGGCCGTAACTTTGTGATCACCGGCTTAAGTCATGGTGAAGCACAAAACCTCGCACTGCTGCTGCGTGC
TGGTGCCCTGATTGCGCCCGTATCGATTGTGGAAGAACGTACTATCGGCCCAAGCCTGGGTGCGGAAAACATCGAAAGCG
GTGTGCAAGCCATGATTTGGGGTATGGCAGTCGTACTTATCTTCATGCTGGTTTATTACCGTAGTTTCGGCTTGATCGCT
AACTTAGCCTTGACGGCCAACTTAGTGATGGTGGTTGGGGTGATGTCTATGATCCCTGGCGCCGTATTAACCCTGCCTGG
TATTGCGGGTATGGTGTTAACAGTGGGTATGGCGGTTGACGGTAACGTACTGATTTACGAACGTATCCGTGAAGAATTAC
GTGCAGGTCGTAGCGTACAGCAGGCGATTCACGAAGGTTACGGTAACGCATTCTCTACCATCGCTGACGCTAACATCACT
ACCTTCTTGACAGCGCTGATCCTGTTCGCCGTCGGTACTGGCGCGATCAAAGGCTTCGCGGTGACCCTGATGATCGGTAT
TGCTACATCGATGTTTACCGCTATCGTGGGTACCCGCGCAATCGTGAACGCGATTTGGGGCGGTAAGCGCGTGAAGACGC
TGTCTATCTAA

Upstream 100 bases:

>100_bases
GCTTGAACGACACGACTCAAATTACAATTAAAAAAGATTACATTGCAGCTGTATTGCCTAAGGGCTCTATCCAGTCGTTG
TAAGCCAAGAGGGCTCAGGC

Downstream 100 bases:

>100_bases
GGGGAAGCGATAATGTTAGAAATTTTATCTTTAAAACGTACGGTTAACTTCCTCCGTCATGCGCTGCCTATCAGTATCAT
GTCTGCCATTTTGGTATTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE
EKIRYAGIRNNAQGIEIKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRVKTLSI

Sequences:

>Translated_616_residues
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE
EKIRYAGIRNNAQGIEIKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRVKTLSI
>Mature_616_residues
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLRE
EKIRYAGIRNNAQGIEIKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRVKTLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=59.3851132686084, Blast_Score=738, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66614; Mature: 66614

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHHHHC
GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSP
CCEEEHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRNNAQGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
DAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
PAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRA
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCEEEEECC
>Mature Secondary Structure
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHHHHC
GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEDLGDKFTVALNLAPATPQWLESMGGSP
CCEEEHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRNNAQGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
DAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSETYLKQIKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
PAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRA
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]