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The map label for this gene is yfiK [H]

Identifier: 117919601

GI number: 117919601

Start: 1358986

End: 1359663

Strand: Reverse

Name: yfiK [H]

Synonym: Shewana3_1152

Alternate gene names: 117919601

Gene position: 1359663-1358986 (Counterclockwise)

Preceding gene: 117919602

Following gene: 117919598

Centisome position: 27.35

GC content: 48.67

Gene sequence:

>678_bases
ATGGAATCTCAGCATAAAGTCACAACCTATGGTCAGCCCACGGCGCGCACTATCAGAGTAGGATTAGTGGAAGATCAACA
GCTTGTACGTCAGGGTATCGCCAGCTTGATTGCCATCTCACAGCATATCGAGGTGAGCTGGCAGGCAGAGAATGGTCAAG
AGGCGCTAAAACGACTGCAAACCGATGCCGTAGATGTGCTTTTAAGCGATATACGCATGCCTGTGCTCGATGGTATCAGT
CTGCTAAAACAGCTTCGCGCTGCACAAAATTCCATACCAGTCATTATGTTAACCACCTTTGATGACAGCGAATTGTTTTT
AAATAGCCTGCAGGCGGGCGCGAATGGCTTCTTATTGAAAGATGTCTCTCTGGATAAATTACTTGAGGCCATCGAAACCG
TGGCTCAGGGCGGACACTTGATTGAACCATCAGTGTTAGAACAGATGCAGCAATCCTCTGCAACAGCGCAAAGCGGCCCG
ACTCACGACTTATTATCCGAACGCGAGCGGGAGATCTTAGGTTTTATGGCGGGGGGATTTTCCAATAAAGAAATTGCCAA
TGCAGTGTTTTTGGCCGAAGGCACGGTCAAAAACCATGTCTCCACCATACTGGCTAAACTCGATTGCCGTGACCGCACCC
AAGCCGTGCTTAAGGGGTTGCAGCTCTCTTTGATTTAA

Upstream 100 bases:

>100_bases
CGCGTACTCAAGGCTGCTCGCTAATGATTCGTCTGCCGCGCTGCAACGCATTGTAATGCGCCATGTAAACCGACACGCTT
AATCAAGGAATGAATCCCCC

Downstream 100 bases:

>100_bases
GAAATCCGGCAAGTTTAAGGATTGGCTTATAAATGCCAGGCTCTAAATATTCTGCCTTTAACCATTTGATTTAAGACAAA
TCGCAACCAATAAAAAAGGG

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MESQHKVTTYGQPTARTIRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPVLDGIS
LLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVAQGGHLIEPSVLEQMQQSSATAQSGP
THDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI

Sequences:

>Translated_225_residues
MESQHKVTTYGQPTARTIRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPVLDGIS
LLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVAQGGHLIEPSVLEQMQQSSATAQSGP
THDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI
>Mature_225_residues
MESQHKVTTYGQPTARTIRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQTDAVDVLLSDIRMPVLDGIS
LLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLKDVSLDKLLEAIETVAQGGHLIEPSVLEQMQQSSATAQSGP
THDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=209, Percent_Identity=33.0143540669856, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1790102, Length=190, Percent_Identity=34.7368421052632, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786747, Length=198, Percent_Identity=28.7878787878788, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788222, Length=192, Percent_Identity=31.25, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787473, Length=198, Percent_Identity=29.7979797979798, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788712, Length=189, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790299, Length=118, Percent_Identity=35.5932203389831, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=35.7798165137615, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790437, Length=122, Percent_Identity=31.1475409836066, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24511; Mature: 24511

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESQHKVTTYGQPTARTIRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQ
CCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHH
TDAVDVLLSDIRMPVLDGISLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE
DVSLDKLLEAIETVAQGGHLIEPSVLEQMQQSSATAQSGPTHDLLSEREREILGFMAGGF
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
SNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI
CCHHHHHHHEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MESQHKVTTYGQPTARTIRVGLVEDQQLVRQGIASLIAISQHIEVSWQAENGQEALKRLQ
CCCCCCEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHH
TDAVDVLLSDIRMPVLDGISLLKQLRAAQNSIPVIMLTTFDDSELFLNSLQAGANGFLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE
DVSLDKLLEAIETVAQGGHLIEPSVLEQMQQSSATAQSGPTHDLLSEREREILGFMAGGF
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
SNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI
CCHHHHHHHEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]