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The map label for this gene is ycfQ [H]

Identifier: 117919525

GI number: 117919525

Start: 1261463

End: 1262083

Strand: Reverse

Name: ycfQ [H]

Synonym: Shewana3_1076

Alternate gene names: 117919525

Gene position: 1262083-1261463 (Counterclockwise)

Preceding gene: 117919529

Following gene: 117919523

Centisome position: 25.38

GC content: 52.17

Gene sequence:

>621_bases
ATGATGTCAACCGTCACCCAGACGCCCTGCGTAGGTCGCCCACGAGCCTTCGACGCCGACGATGCATTGGCCAAAGCCTT
GGAAGTCTTCTGGCAAAAAGGTTTTGAAGGTACATCGTTAACCGATCTGACTCAGGCCATGGGCATCAACAAACCCAGCC
TATATGCCGCCTTTGGTAATAAAGAGCAGCTGTTTCTGAAAGCGATCGAGTTATACGAGCAGCGACCCTGTGCATTTTTC
TATCCTTCGCTTGAAAAAGAAACCGCCTATCAAGTGGTTGAGGCCATGCTCTATGGCGCTGCATCATCTTTAGTGGATGA
GAGTCACCCCCAAGGCTGCTTAATTGTTCAAGGCGCCCTCGCCTGTAGCGAAGCCGGACAAGCGATCAAAGATACATTAA
TTACCCGCCGCCGTGACGGAGAACAGGCACTATGCCAACGTCTGCAACGGGCAAAGGATGAAGGCGATTTACCCGCAGAT
GCCGATCCGCTGCTGCTGTCTCGATACATTGGCACAGTGCTGCAAGGCATGGCAGTGCAAGCCACCAATGGCATATGCCC
CGGAGAATTACGCAAAGTCGCCGAGCTAGTGTTAGCCAACTTTCCGAAAAATAATGCGTGA

Upstream 100 bases:

>100_bases
TGATGAGTTACTCACCTAACCCGCAGACAGCTGGCAAGAGTGGCTGGACATGAACTAAACCCATGTCTATCCTAGGGGCA
ATTGAGAATTGAGGAGCCTA

Downstream 100 bases:

>100_bases
TAGTGCGACTAGCTGATAATCATTGACATAAACCCCAGCAAACTCTGGGGTTTATGCTTTTAAGCCGCTATCGAAATTAA
TCTTGAGATTAGTGCTGAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MMSTVTQTPCVGRPRAFDADDALAKALEVFWQKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFF
YPSLEKETAYQVVEAMLYGAASSLVDESHPQGCLIVQGALACSEAGQAIKDTLITRRRDGEQALCQRLQRAKDEGDLPAD
ADPLLLSRYIGTVLQGMAVQATNGICPGELRKVAELVLANFPKNNA

Sequences:

>Translated_206_residues
MMSTVTQTPCVGRPRAFDADDALAKALEVFWQKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFF
YPSLEKETAYQVVEAMLYGAASSLVDESHPQGCLIVQGALACSEAGQAIKDTLITRRRDGEQALCQRLQRAKDEGDLPAD
ADPLLLSRYIGTVLQGMAVQATNGICPGELRKVAELVLANFPKNNA
>Mature_206_residues
MMSTVTQTPCVGRPRAFDADDALAKALEVFWQKGFEGTSLTDLTQAMGINKPSLYAAFGNKEQLFLKAIELYEQRPCAFF
YPSLEKETAYQVVEAMLYGAASSLVDESHPQGCLIVQGALACSEAGQAIKDTLITRRRDGEQALCQRLQRAKDEGDLPAD
ADPLLLSRYIGTVLQGMAVQATNGICPGELRKVAELVLANFPKNNA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=206, Percent_Identity=33.495145631068, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI87082397, Length=71, Percent_Identity=45.0704225352113, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22409; Mature: 22409

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSTVTQTPCVGRPRAFDADDALAKALEVFWQKGFEGTSLTDLTQAMGINKPSLYAAFGN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
KEQLFLKAIELYEQRPCAFFYPSLEKETAYQVVEAMLYGAASSLVDESHPQGCLIVQGAL
CHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHH
ACSEAGQAIKDTLITRRRDGEQALCQRLQRAKDEGDLPADADPLLLSRYIGTVLQGMAVQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATNGICPGELRKVAELVLANFPKNNA
CCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMSTVTQTPCVGRPRAFDADDALAKALEVFWQKGFEGTSLTDLTQAMGINKPSLYAAFGN
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEECCC
KEQLFLKAIELYEQRPCAFFYPSLEKETAYQVVEAMLYGAASSLVDESHPQGCLIVQGAL
CHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHH
ACSEAGQAIKDTLITRRRDGEQALCQRLQRAKDEGDLPADADPLLLSRYIGTVLQGMAVQ
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATNGICPGELRKVAELVLANFPKNNA
CCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]