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The map label for this gene is yjjV [H]

Identifier: 117919487

GI number: 117919487

Start: 1214197

End: 1214964

Strand: Direct

Name: yjjV [H]

Synonym: Shewana3_1038

Alternate gene names: 117919487

Gene position: 1214197-1214964 (Clockwise)

Preceding gene: 117919486

Following gene: 117919488

Centisome position: 24.42

GC content: 43.62

Gene sequence:

>768_bases
ATGATGCTAGATACCCACGCACACCTCGATTTCGCAGAGTTTGATAGTGACCGCGAACAGGTCGTGCAGCGTATGCGACA
AGCGGGCATCGATAATCTGATTATTCCGGGAGTTTCCCCGCTGCATTGGGAAAAGCAGTTGGCGATTGCAGAGCAATATC
AATGTTATTTTGCCTTAGGTATCCATCCTTGGTTTTGCCCCGAAGATGTTGATAAGGCTATTTCTGCATTAACATTTCAA
GTTTCTCAGTTACGAGAATGTCCCCGTTTTGTTGCTATTGGTGAATGCGGATTAGACAAACTTTATGCTGATAATTGGAG
TAAACAGTTAGCATTTTTCGATGCGCAGCTAACTCTCGCCAATGAGCTGAACTTGCCCGTTATCGTCCATGCAGTCAAAG
CTCATCAAGAGGTATTGTCCCATTTAAAGCGCCACAAACTCCCAAAAGGTGGCGTAATACACGCCTTTTCTGGCAGTCCC
GATATAGCTGCTGAATATATTAAGTTGGGTTTTAAGCTAGGTATTGGGGGCTTAGTGATGAATCCCAATGCGAAAAAACT
GCTCAAAACCGTCAGCGAATTGCCCCTAGACAGCTTCCTACTTGAGACTGATTCTCCAGCCATGACCCCGCAAAATGTTA
CAGAAAAACGGAATCAACCCGCTAACGCTGTACTTTTTATAGACAAAATTGCAACTTTGCAAAAAAAATCTAGTGTTCTA
ATATCAGAACACTTGGTGTCGAATGCAATGCAACTGTTTGACCTTTAG

Upstream 100 bases:

>100_bases
ATGCCTCGATTGGAGGACCCGCCATTAGCCCGCAACAAGCCGAATTGCCAAGAAAAGGCGCCTGCACCCCAAGGAGAAAC
AAAATCGGAGTAACAGATTG

Downstream 100 bases:

>100_bases
TTGTTTTTGGTTAAACAGGTGTAGGTCGCAATAGCATTTTGCTCTAAGCGGTTGAAATTAAACTCCAAAATTTTGATCAA
AACGACGATTTTCGACTTTC

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MMLDTHAHLDFAEFDSDREQVVQRMRQAGIDNLIIPGVSPLHWEKQLAIAEQYQCYFALGIHPWFCPEDVDKAISALTFQ
VSQLRECPRFVAIGECGLDKLYADNWSKQLAFFDAQLTLANELNLPVIVHAVKAHQEVLSHLKRHKLPKGGVIHAFSGSP
DIAAEYIKLGFKLGIGGLVMNPNAKKLLKTVSELPLDSFLLETDSPAMTPQNVTEKRNQPANAVLFIDKIATLQKKSSVL
ISEHLVSNAMQLFDL

Sequences:

>Translated_255_residues
MMLDTHAHLDFAEFDSDREQVVQRMRQAGIDNLIIPGVSPLHWEKQLAIAEQYQCYFALGIHPWFCPEDVDKAISALTFQ
VSQLRECPRFVAIGECGLDKLYADNWSKQLAFFDAQLTLANELNLPVIVHAVKAHQEVLSHLKRHKLPKGGVIHAFSGSP
DIAAEYIKLGFKLGIGGLVMNPNAKKLLKTVSELPLDSFLLETDSPAMTPQNVTEKRNQPANAVLFIDKIATLQKKSSVL
ISEHLVSNAMQLFDL
>Mature_255_residues
MMLDTHAHLDFAEFDSDREQVVQRMRQAGIDNLIIPGVSPLHWEKQLAIAEQYQCYFALGIHPWFCPEDVDKAISALTFQ
VSQLRECPRFVAIGECGLDKLYADNWSKQLAFFDAQLTLANELNLPVIVHAVKAHQEVLSHLKRHKLPKGGVIHAFSGSP
DIAAEYIKLGFKLGIGGLVMNPNAKKLLKTVSELPLDSFLLETDSPAMTPQNVTEKRNQPANAVLFIDKIATLQKKSSVL
ISEHLVSNAMQLFDL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=268, Percent_Identity=30.2238805970149, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI110349730, Length=268, Percent_Identity=30.2238805970149, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=30.859375, Blast_Score=100, Evalue=9e-22,
Organism=Homo sapiens, GI226061853, Length=274, Percent_Identity=30.2919708029197, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI14042943, Length=265, Percent_Identity=24.9056603773585, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=233, Percent_Identity=30.4721030042918, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI225903439, Length=235, Percent_Identity=25.531914893617, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI225903424, Length=280, Percent_Identity=25, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=37.7431906614786, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI48994985, Length=265, Percent_Identity=30.9433962264151, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=28.735632183908, Blast_Score=103, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17559024, Length=220, Percent_Identity=30, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=270, Percent_Identity=28.5185185185185, Blast_Score=88, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24648690, Length=288, Percent_Identity=28.4722222222222, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24586117, Length=269, Percent_Identity=23.7918215613383, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221330018, Length=269, Percent_Identity=23.7918215613383, Blast_Score=76, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28468; Mature: 28468

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLDTHAHLDFAEFDSDREQVVQRMRQAGIDNLIIPGVSPLHWEKQLAIAEQYQCYFALG
CCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCEEEEEEC
IHPWFCPEDVDKAISALTFQVSQLRECPRFVAIGECGLDKLYADNWSKQLAFFDAQLTLA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHHHEEHEEEEE
NELNLPVIVHAVKAHQEVLSHLKRHKLPKGGVIHAFSGSPDIAAEYIKLGFKLGIGGLVM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
NPNAKKLLKTVSELPLDSFLLETDSPAMTPQNVTEKRNQPANAVLFIDKIATLQKKSSVL
CCCHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHHCCCCCCEEEEHHHHHHHHHHHHHH
ISEHLVSNAMQLFDL
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MMLDTHAHLDFAEFDSDREQVVQRMRQAGIDNLIIPGVSPLHWEKQLAIAEQYQCYFALG
CCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHCEEEEEEC
IHPWFCPEDVDKAISALTFQVSQLRECPRFVAIGECGLDKLYADNWSKQLAFFDAQLTLA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHCCHHHHHHHEEHEEEEE
NELNLPVIVHAVKAHQEVLSHLKRHKLPKGGVIHAFSGSPDIAAEYIKLGFKLGIGGLVM
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEE
NPNAKKLLKTVSELPLDSFLLETDSPAMTPQNVTEKRNQPANAVLFIDKIATLQKKSSVL
CCCHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHHCCCCCCEEEEHHHHHHHHHHHHHH
ISEHLVSNAMQLFDL
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]