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The map label for this gene is ydcR [H]

Identifier: 117919378

GI number: 117919378

Start: 1085688

End: 1087100

Strand: Direct

Name: ydcR [H]

Synonym: Shewana3_0929

Alternate gene names: 117919378

Gene position: 1085688-1087100 (Clockwise)

Preceding gene: 117919374

Following gene: 117919379

Centisome position: 21.84

GC content: 51.1

Gene sequence:

>1413_bases
ATGTCTAAATACCAACAGTTAGCGCAGGATCTCAAAAACCGAATTTCTCAAGGTGTCTGGCAGGCGGGGGATAAACTGCC
CTCATTGCGGCAAACCGTGACGGATTCGGGGCTGAGTTTAATGACGGTGCTTAACGCCTATCAGTTGCTCGAAAGCCAAG
GCGTGATATTGGCGCAGGCAAAATCCGGTTACATAGTGGCGCCTCAGCCCGAAGCCTTTCGTTATCCAGAGACTCAACGA
CAAATCTATTTCTCCGATAGGCTCGATATTAACGAGTTTGTGTTTAACGTATTACAGGCATCGAAACAGGCGGGGATTGT
GCCCTTTGGCTCAGCATTCCCCGATCCCAGTTTATTTCCACAGCAAGCCTTGGCGCGCTCGTTGGTCAAGGTCACTCGGC
AGATGTCGCCGTCGTTTGCGGCCGATAATCTTCCCCCCGGTAATGCTGGGTTACGCAAGGCGATTTCCCAACGTTATGCC
AAGTTAGGCATGAGCGTGGCGCCCGATGAAATTTTAATTACCTCGGGGGCGATGGAGGCGCTGAACTTGAGCTTAGCGGC
CTTGGCTCAGGCGGGGGATTGGGTCGTGATTGAATCGCCTACCTTTTATGGTGCGATGCAAGCCATTGAACGCCTCAAGC
TGAGGGCGATTGCGGTCGCGACGGATCCCCGCGAAGGGATTGATCTTAACGCTTTGGCTGAAGTACTTAAGACCTATCCC
GTCAAAGCCTGTTGGTTGATGAGTCTGCATCAAAACCCCTTAGGTTGTAGTTTGTCTGACCAGAAAAAACAGGCTGTTTA
TCAACTGCTTTGTGAACATAATGTCAGTCTGATTGAAGATGATGTATATCAAGAGCTTTATGTCGGTTCGAGTGCGCCTA
GGCCGATTAAAGCCTTAGACACTCAAGGCTGCGTACTGCATTGTGGTTCCTTTTCTAAATCCTTGATTGCGGGATATCGA
GTCGGTTGGGTTGCCGCGGGGCGCCATGCCCCGCAATTGCAACGCTTGCAATTAATGTCGACCCTCTCAACCAGTGCGCC
TATGCAACTGGCCATCGCCGATTTTATTCAGTCACCCCAATATGAGCGTCATTTAAAGCGCTTACGCCACACCTTAGCGG
ATCGCAAATTTGCCATGTATCAGTTGCTGCGGGCTCACTTGCCGGAGTCTGTAAGTGTGAACTTTGAGCCGGGCGGTTAT
TTCCTCTGGCTGGCGTTGCCTAGTCATATGGATGCGACGCAGATATACCATAGTGCACTTGAGCGAGGGATCAGTATCGC
GCCGGGGAATCTCTTTAGTAATCAAGCAGAGTTTCGCCATTTTATGCGCATTAATGCCTCCTACGATTGCTCACCCGAGT
TAGTGCGTGCGGTAAAAGCGCTCGCGCAGATCCTAGAGCACTCCCCGAATTAA

Upstream 100 bases:

>100_bases
TCAGCGCCTCGGATTCGTACCGCTGATGGCTTGTGCGCTATTAGACCATGGGGTAACCTGGCTATAACAGATACAGAATT
AACTGAGTTAGCTATAACAG

Downstream 100 bases:

>100_bases
TAGGCCAAAGTGTGAGCCGTTGCGTCAATTTTAATGGCGATTTAAAAATTTTTAGACTTCTAGATGTCTATCTGTTAGCT
TGAGTGCAGTGCACAAATCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 469

Protein sequence:

>470_residues
MSKYQQLAQDLKNRISQGVWQAGDKLPSLRQTVTDSGLSLMTVLNAYQLLESQGVILAQAKSGYIVAPQPEAFRYPETQR
QIYFSDRLDINEFVFNVLQASKQAGIVPFGSAFPDPSLFPQQALARSLVKVTRQMSPSFAADNLPPGNAGLRKAISQRYA
KLGMSVAPDEILITSGAMEALNLSLAALAQAGDWVVIESPTFYGAMQAIERLKLRAIAVATDPREGIDLNALAEVLKTYP
VKACWLMSLHQNPLGCSLSDQKKQAVYQLLCEHNVSLIEDDVYQELYVGSSAPRPIKALDTQGCVLHCGSFSKSLIAGYR
VGWVAAGRHAPQLQRLQLMSTLSTSAPMQLAIADFIQSPQYERHLKRLRHTLADRKFAMYQLLRAHLPESVSVNFEPGGY
FLWLALPSHMDATQIYHSALERGISIAPGNLFSNQAEFRHFMRINASYDCSPELVRAVKALAQILEHSPN

Sequences:

>Translated_470_residues
MSKYQQLAQDLKNRISQGVWQAGDKLPSLRQTVTDSGLSLMTVLNAYQLLESQGVILAQAKSGYIVAPQPEAFRYPETQR
QIYFSDRLDINEFVFNVLQASKQAGIVPFGSAFPDPSLFPQQALARSLVKVTRQMSPSFAADNLPPGNAGLRKAISQRYA
KLGMSVAPDEILITSGAMEALNLSLAALAQAGDWVVIESPTFYGAMQAIERLKLRAIAVATDPREGIDLNALAEVLKTYP
VKACWLMSLHQNPLGCSLSDQKKQAVYQLLCEHNVSLIEDDVYQELYVGSSAPRPIKALDTQGCVLHCGSFSKSLIAGYR
VGWVAAGRHAPQLQRLQLMSTLSTSAPMQLAIADFIQSPQYERHLKRLRHTLADRKFAMYQLLRAHLPESVSVNFEPGGY
FLWLALPSHMDATQIYHSALERGISIAPGNLFSNQAEFRHFMRINASYDCSPELVRAVKALAQILEHSPN
>Mature_469_residues
SKYQQLAQDLKNRISQGVWQAGDKLPSLRQTVTDSGLSLMTVLNAYQLLESQGVILAQAKSGYIVAPQPEAFRYPETQRQ
IYFSDRLDINEFVFNVLQASKQAGIVPFGSAFPDPSLFPQQALARSLVKVTRQMSPSFAADNLPPGNAGLRKAISQRYAK
LGMSVAPDEILITSGAMEALNLSLAALAQAGDWVVIESPTFYGAMQAIERLKLRAIAVATDPREGIDLNALAEVLKTYPV
KACWLMSLHQNPLGCSLSDQKKQAVYQLLCEHNVSLIEDDVYQELYVGSSAPRPIKALDTQGCVLHCGSFSKSLIAGYRV
GWVAAGRHAPQLQRLQLMSTLSTSAPMQLAIADFIQSPQYERHLKRLRHTLADRKFAMYQLLRAHLPESVSVNFEPGGYF
LWLALPSHMDATQIYHSALERGISIAPGNLFSNQAEFRHFMRINASYDCSPELVRAVKALAQILEHSPN

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=319, Percent_Identity=25.0783699059561, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI33469970, Length=319, Percent_Identity=25.0783699059561, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI4507369, Length=176, Percent_Identity=23.8636363636364, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1787710, Length=471, Percent_Identity=53.2908704883227, Blast_Score=513, Evalue=1e-147,
Organism=Escherichia coli, GI1790797, Length=467, Percent_Identity=34.475374732334, Blast_Score=281, Evalue=7e-77,
Organism=Saccharomyces cerevisiae, GI6321236, Length=318, Percent_Identity=23.5849056603774, Blast_Score=83, Evalue=8e-17,
Organism=Drosophila melanogaster, GI21356535, Length=344, Percent_Identity=23.8372093023256, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51947; Mature: 51816

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYQQLAQDLKNRISQGVWQAGDKLPSLRQTVTDSGLSLMTVLNAYQLLESQGVILAQA
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEC
KSGYIVAPQPEAFRYPETQRQIYFSDRLDINEFVFNVLQASKQAGIVPFGSAFPDPSLFP
CCCEEECCCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QQALARSLVKVTRQMSPSFAADNLPPGNAGLRKAISQRYAKLGMSVAPDEILITSGAMEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH
LNLSLAALAQAGDWVVIESPTFYGAMQAIERLKLRAIAVATDPREGIDLNALAEVLKTYP
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCC
VKACWLMSLHQNPLGCSLSDQKKQAVYQLLCEHNVSLIEDDVYQELYVGSSAPRPIKALD
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHCC
TQGCVLHCGSFSKSLIAGYRVGWVAAGRHAPQLQRLQLMSTLSTSAPMQLAIADFIQSPQ
CCCCEEECCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
YERHLKRLRHTLADRKFAMYQLLRAHLPESVSVNFEPGGYFLWLALPSHMDATQIYHSAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHH
ERGISIAPGNLFSNQAEFRHFMRINASYDCSPELVRAVKALAQILEHSPN
HCCCEECCCCHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SKYQQLAQDLKNRISQGVWQAGDKLPSLRQTVTDSGLSLMTVLNAYQLLESQGVILAQA
CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEC
KSGYIVAPQPEAFRYPETQRQIYFSDRLDINEFVFNVLQASKQAGIVPFGSAFPDPSLFP
CCCEEECCCCCCCCCCCHHHEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
QQALARSLVKVTRQMSPSFAADNLPPGNAGLRKAISQRYAKLGMSVAPDEILITSGAMEA
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHH
LNLSLAALAQAGDWVVIESPTFYGAMQAIERLKLRAIAVATDPREGIDLNALAEVLKTYP
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHCC
VKACWLMSLHQNPLGCSLSDQKKQAVYQLLCEHNVSLIEDDVYQELYVGSSAPRPIKALD
CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHCC
TQGCVLHCGSFSKSLIAGYRVGWVAAGRHAPQLQRLQLMSTLSTSAPMQLAIADFIQSPQ
CCCCEEECCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
YERHLKRLRHTLADRKFAMYQLLRAHLPESVSVNFEPGGYFLWLALPSHMDATQIYHSAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHHH
ERGISIAPGNLFSNQAEFRHFMRINASYDCSPELVRAVKALAQILEHSPN
HCCCEECCCCHHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]