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The map label for this gene is yadH [H]

Identifier: 117919247

GI number: 117919247

Start: 915498

End: 916268

Strand: Direct

Name: yadH [H]

Synonym: Shewana3_0795

Alternate gene names: 117919247

Gene position: 915498-916268 (Clockwise)

Preceding gene: 117919246

Following gene: 117919248

Centisome position: 18.41

GC content: 46.95

Gene sequence:

>771_bases
ATGAAACAGCTGTATTTTATCGCCTTTAAAAGCATATTAACTAAGGAAATCAATCGTTTTACCCGGATCTGGATCCAGAC
CTTAGTCCCGCCAGCAATCACTATGACCTTGTATTTTTTGATTTTTGGTAACTTGGTCGGTAGCCGCATTGGCGATATGG
GGGGCGTATCTTATATGGAGTTTATTGCGCCTGGTCTAATCATGATGTCGGTGATTACTAACTCCTATTCGAATGTGGCG
AGCTCTTTCTATAGCGCGAAATTTCAACGCAATCTCGAGGAGTTAATGGTCGCGCCTGTACCTCACTATGTGATGATCGC
AGGCTATGTGGGTGGCGGTGTCGCACGGGGCTTATGCGTTGGTTTAATCGTCACGCTAGTCGCCATGTTCTTTGTCGATA
TCAGCTTGCACCATGCAGGCCTTGTGGTCATGACGGTATTTTTAACCTCAGTGCTGTTCTCCTTAGGGGGATTAATTAAC
GCGGTATTTGCCAAGAGTTTCGATGATATCAGCATCATCCCGACGTTTGTGCTCACGCCCTTAACCTACCTCGGAGGGGT
ATTCTATTCACTGTCGTTGCTGCCATCCTTCTGGCAAGGCGTTTCTGCACTGAACCCTGTGGTCTATATGATCAACGTCT
TTCGTTACGGTTTCTTAGGTTTTGCCGATATCAGCATTCCGCTTTCTATTGGCATTATGGTGGGCTTTTGCGCCGTACTC
TGGGGTGTTGCTTATTACCTAATCTCGCGGGGAATAGGGCTGCGTTCGTAA

Upstream 100 bases:

>100_bases
TAACCGCCGCTAAGGTAGAGGTTTTGTCGATGCGTAACAAATCCAATCGTTTAGAAGAACTCTTCGTCGAGTTAGTAAAG
AAAACCCAAGGAGCTAAGGC

Downstream 100 bases:

>100_bases
ATAACGCTCAAGGTTGCATTTTGGAAGGCATAAATTTTATGCCTTTTCATTTGTGGGTTTCTGTTTGGAGGATTATTTAG
CTTCATTTTTGGTGATAACT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MKQLYFIAFKSILTKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGDMGGVSYMEFIAPGLIMMSVITNSYSNVA
SSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCVGLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLIN
AVFAKSFDDISIIPTFVLTPLTYLGGVFYSLSLLPSFWQGVSALNPVVYMINVFRYGFLGFADISIPLSIGIMVGFCAVL
WGVAYYLISRGIGLRS

Sequences:

>Translated_256_residues
MKQLYFIAFKSILTKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGDMGGVSYMEFIAPGLIMMSVITNSYSNVA
SSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCVGLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLIN
AVFAKSFDDISIIPTFVLTPLTYLGGVFYSLSLLPSFWQGVSALNPVVYMINVFRYGFLGFADISIPLSIGIMVGFCAVL
WGVAYYLISRGIGLRS
>Mature_256_residues
MKQLYFIAFKSILTKEINRFTRIWIQTLVPPAITMTLYFLIFGNLVGSRIGDMGGVSYMEFIAPGLIMMSVITNSYSNVA
SSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCVGLIVTLVAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLIN
AVFAKSFDDISIIPTFVLTPLTYLGGVFYSLSLLPSFWQGVSALNPVVYMINVFRYGFLGFADISIPLSIGIMVGFCAVL
WGVAYYLISRGIGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=256, Percent_Identity=67.578125, Blast_Score=353, Evalue=5e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28052; Mature: 28052

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]