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The map label for this gene is yjcL [H]

Identifier: 117919226

GI number: 117919226

Start: 895576

End: 896823

Strand: Direct

Name: yjcL [H]

Synonym: Shewana3_0774

Alternate gene names: 117919226

Gene position: 895576-896823 (Clockwise)

Preceding gene: 117919225

Following gene: 117919227

Centisome position: 18.01

GC content: 48.56

Gene sequence:

>1248_bases
ATGGCAAGCACGGCATTAGTCACCAATGACGCGGTGGCGCTGGGAATATTGGCAACGATTCTGGGATTTGTGTTTTATAC
CAGCAGTAGTAGTCATCCATTTTGGCAAAAGTTTTACCGTTTTATCCCAGCGTTATTACTCTGCTATTTCTTGCCATCGT
TGTTGAATACCTTTGGTGTGATCGATGGTGGGACATCACAGCTTTACTATGTTGCCTCGCGCTACCTATTGCCCGCCTGT
TTGGTGTTATTGATTTTAAGTGTGGATTTAAAAGCCATCTTAGGACTTGGGCCTAAGGCAGTGATCATGTTTTTAACTGG
GACAGTCGGCATTGTGATTGGCGGGCCGATTGCACTGCTCGTGGTGTCCTTTATCGAGCCATCGTTGATTGGTGTCGATA
GTCCTGATGCGGTGTGGCGTGGCATGACGACCCTTGCGGGCAGTTGGATTGGCGGCGGTGCGAACCAAGCCGCGATGAAA
GAAATTTATGAAGTGGGCGGCAATATCTTCTCCGTGATGGTGACAGTCGATGTGATTGTGGCCAATATTTGGATGGCGGT
ATTGTTGTTTATGGCGTCAAAAGCCAAGGAAATCGATGCCAAAACAGGTGCGGATACCTCAGCAATTGAGACTTTAAAGA
ACAAGGTTGAACAGTATCACGCTGAAAATGCGCGTATTCCAAGCCTGCGTGATCTAATGCTGATTGTGGCTGTCGGATTT
GGCATCACGGGCGTGGCCCATATTGCCGCCGATTTCCTCGGTCCTTATTTTGAGGCCAACTATCCTTGGACTGAGGATTA
CAGTTTAACCTCTAAGTTCTTCTGGTTAGTGGTGATTGTGACCACCATAGGTTTAGCTATGTCCTTTAGCCCTATGCGCC
ATTTAGAGGCGGCGGGGGCTTCTAAGGTGGCGTCGGCGTTCTTGTATATTTTGGTGGCGACCATTGGTTTACATATGGAT
GTAAGCAAGGTGCTTGATACACCGCTATATTTTTTAGTGGGCATTATTTGGATGATAGTGCACGCTGGCTTTATGTTATT
GATTGCTAAGTTAATTAAGGCTCCATTGTTTTATATGGCCGTGGGCAGTCAGGCAAACGTGGGGGGAGCTGCATCGGCGC
CCGTTGTGGCAGCGGCGTTCCACCCAGCTTTAGCCCCTGTAGGGGTATTGTTAGCCGTATTTGGTTATGCGCTAGGCACT
TATATGGCGTGGCTCTGCGGTCAGTTACTGCAAGCCGTCGCGGTATAG

Upstream 100 bases:

>100_bases
ACAACAATAAATGGGGCGAATGGGAAGTTTGCCCACTAACTGCAAACGGCAGTTTTTAGCATAAATACAATAACAACTGT
ACCAAACAGGGAGAATACAC

Downstream 100 bases:

>100_bases
TTGCCTTAGCTCCTGTTCAGCGCTGGTAAGGTTCCAGCATTTTAGAGAGAAGTTGCGATGAGTAATAAAATCATAAACCT
AGGTTCAATCGAGATCGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MASTALVTNDAVALGILATILGFVFYTSSSSHPFWQKFYRFIPALLLCYFLPSLLNTFGVIDGGTSQLYYVASRYLLPAC
LVLLILSVDLKAILGLGPKAVIMFLTGTVGIVIGGPIALLVVSFIEPSLIGVDSPDAVWRGMTTLAGSWIGGGANQAAMK
EIYEVGGNIFSVMVTVDVIVANIWMAVLLFMASKAKEIDAKTGADTSAIETLKNKVEQYHAENARIPSLRDLMLIVAVGF
GITGVAHIAADFLGPYFEANYPWTEDYSLTSKFFWLVVIVTTIGLAMSFSPMRHLEAAGASKVASAFLYILVATIGLHMD
VSKVLDTPLYFLVGIIWMIVHAGFMLLIAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAVFGYALGT
YMAWLCGQLLQAVAV

Sequences:

>Translated_415_residues
MASTALVTNDAVALGILATILGFVFYTSSSSHPFWQKFYRFIPALLLCYFLPSLLNTFGVIDGGTSQLYYVASRYLLPAC
LVLLILSVDLKAILGLGPKAVIMFLTGTVGIVIGGPIALLVVSFIEPSLIGVDSPDAVWRGMTTLAGSWIGGGANQAAMK
EIYEVGGNIFSVMVTVDVIVANIWMAVLLFMASKAKEIDAKTGADTSAIETLKNKVEQYHAENARIPSLRDLMLIVAVGF
GITGVAHIAADFLGPYFEANYPWTEDYSLTSKFFWLVVIVTTIGLAMSFSPMRHLEAAGASKVASAFLYILVATIGLHMD
VSKVLDTPLYFLVGIIWMIVHAGFMLLIAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAVFGYALGT
YMAWLCGQLLQAVAV
>Mature_414_residues
ASTALVTNDAVALGILATILGFVFYTSSSSHPFWQKFYRFIPALLLCYFLPSLLNTFGVIDGGTSQLYYVASRYLLPACL
VLLILSVDLKAILGLGPKAVIMFLTGTVGIVIGGPIALLVVSFIEPSLIGVDSPDAVWRGMTTLAGSWIGGGANQAAMKE
IYEVGGNIFSVMVTVDVIVANIWMAVLLFMASKAKEIDAKTGADTSAIETLKNKVEQYHAENARIPSLRDLMLIVAVGFG
ITGVAHIAADFLGPYFEANYPWTEDYSLTSKFFWLVVIVTTIGLAMSFSPMRHLEAAGASKVASAFLYILVATIGLHMDV
SKVLDTPLYFLVGIIWMIVHAGFMLLIAKLIKAPLFYMAVGSQANVGGAASAPVVAAAFHPALAPVGVLLAVFGYALGTY
MAWLCGQLLQAVAV

Specific function: Unknown

COG id: COG5505

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008537 [H]

Pfam domain/function: PF05684 DUF819 [H]

EC number: NA

Molecular weight: Translated: 44168; Mature: 44037

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASTALVTNDAVALGILATILGFVFYTSSSSHPFWQKFYRFIPALLLCYFLPSLLNTFGV
CCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDGGTSQLYYVASRYLLPACLVLLILSVDLKAILGLGPKAVIMFLTGTVGIVIGGPIALL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
VVSFIEPSLIGVDSPDAVWRGMTTLAGSWIGGGANQAAMKEIYEVGGNIFSVMVTVDVIV
HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
ANIWMAVLLFMASKAKEIDAKTGADTSAIETLKNKVEQYHAENARIPSLRDLMLIVAVGF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GITGVAHIAADFLGPYFEANYPWTEDYSLTSKFFWLVVIVTTIGLAMSFSPMRHLEAAGA
HHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
SKVASAFLYILVATIGLHMDVSKVLDTPLYFLVGIIWMIVHAGFMLLIAKLIKAPLFYMA
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
VGSQANVGGAASAPVVAAAFHPALAPVGVLLAVFGYALGTYMAWLCGQLLQAVAV
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ASTALVTNDAVALGILATILGFVFYTSSSSHPFWQKFYRFIPALLLCYFLPSLLNTFGV
CCCCEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IDGGTSQLYYVASRYLLPACLVLLILSVDLKAILGLGPKAVIMFLTGTVGIVIGGPIALL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
VVSFIEPSLIGVDSPDAVWRGMTTLAGSWIGGGANQAAMKEIYEVGGNIFSVMVTVDVIV
HHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH
ANIWMAVLLFMASKAKEIDAKTGADTSAIETLKNKVEQYHAENARIPSLRDLMLIVAVGF
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
GITGVAHIAADFLGPYFEANYPWTEDYSLTSKFFWLVVIVTTIGLAMSFSPMRHLEAAGA
HHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCH
SKVASAFLYILVATIGLHMDVSKVLDTPLYFLVGIIWMIVHAGFMLLIAKLIKAPLFYMA
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHE
VGSQANVGGAASAPVVAAAFHPALAPVGVLLAVFGYALGTYMAWLCGQLLQAVAV
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]