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The map label for this gene is sirB1 [H]

Identifier: 117919225

GI number: 117919225

Start: 894643

End: 895431

Strand: Direct

Name: sirB1 [H]

Synonym: Shewana3_0773

Alternate gene names: 117919225

Gene position: 894643-895431 (Clockwise)

Preceding gene: 117919224

Following gene: 117919226

Centisome position: 17.99

GC content: 50.44

Gene sequence:

>789_bases
ATGGGTAAATACAATCTGCAAGATGGCATTTCTTTGCCCGAGTCGGCATTGGATGTAGGTGCTCACCTTGGATTTTCAAA
CCTCGAAGCGGCGAAATGGGCTTGGTTTGAATTGGCGGGAGCCGTATTAAGTCATTACCTGGTGGATCAACAGCAACGCT
TAAATGCGTTGCTGCATTGGTTTTATCAGGACTTGGGTTTTAGTGTCCGCGACAATTACTTCAGTACCGAAGCGGCGGAT
TTAGGCACTTGTCTTATCACTAAACAGGGCAATAGCACCGCACTGGCGACGGTATTGATGCTACTGGCCAAGCAGCTCGA
TTTAGAGCTCGAAGCCTTACTCTTACCGGGTAATACCGTGCTTCGCAGTAACGTTGCTGGTGTTGTGCGTTATCACGATC
CGCTGACGGGCAAAGAGTTGACGAAACATCAGCTCCATGTGTTAGTGCGTGGTGAGCTGGGTAACGCGGCTGAGCTTAAG
CCAAGCTACTTAAAGGCGGCGTCGGTGAAGAAGCTGATTTCGCGCATGCTGCATGAGCTTAAGGCGGGGTGTATCGTGTC
GCATCAATTTGAGGCGGCGATGGAATGTTGCAACTTGCTGCTACAGTGGCACCCTGATGATGTGCACTTAAATCGGGAGC
GCGCCTTTATCGCCCAGCAACTGGGGTGTATCAATGTCGCGGCGGCCGATCTGCAACACTTTGTCGATAACAGCCCGCAT
GATCCTGTCATCGAAATCGTCAAAATGCAGCTCAAAGAGCTTAGCGAACACGCTGAAATCTATCACTAA

Upstream 100 bases:

>100_bases
GAAACAAATTGTTCAAAGTTTTTGCCTTTTTAGGTGCATTAGGTTGGTTAGTTTACGCGGCCAAATTGGCGCATTTTAAA
CAAGCGGTATTATTGGGTTA

Downstream 100 bases:

>100_bases
ATCTTAAAGGAGAGCCTAACAGGCTCTCCTTGTTTTTCAAAAAAACAACAATAAATGGGGCGAATGGGAAGTTTGCCCAC
TAACTGCAAACGGCAGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MGKYNLQDGISLPESALDVGAHLGFSNLEAAKWAWFELAGAVLSHYLVDQQQRLNALLHWFYQDLGFSVRDNYFSTEAAD
LGTCLITKQGNSTALATVLMLLAKQLDLELEALLLPGNTVLRSNVAGVVRYHDPLTGKELTKHQLHVLVRGELGNAAELK
PSYLKAASVKKLISRMLHELKAGCIVSHQFEAAMECCNLLLQWHPDDVHLNRERAFIAQQLGCINVAAADLQHFVDNSPH
DPVIEIVKMQLKELSEHAEIYH

Sequences:

>Translated_262_residues
MGKYNLQDGISLPESALDVGAHLGFSNLEAAKWAWFELAGAVLSHYLVDQQQRLNALLHWFYQDLGFSVRDNYFSTEAAD
LGTCLITKQGNSTALATVLMLLAKQLDLELEALLLPGNTVLRSNVAGVVRYHDPLTGKELTKHQLHVLVRGELGNAAELK
PSYLKAASVKKLISRMLHELKAGCIVSHQFEAAMECCNLLLQWHPDDVHLNRERAFIAQQLGCINVAAADLQHFVDNSPH
DPVIEIVKMQLKELSEHAEIYH
>Mature_261_residues
GKYNLQDGISLPESALDVGAHLGFSNLEAAKWAWFELAGAVLSHYLVDQQQRLNALLHWFYQDLGFSVRDNYFSTEAADL
GTCLITKQGNSTALATVLMLLAKQLDLELEALLLPGNTVLRSNVAGVVRYHDPLTGKELTKHQLHVLVRGELGNAAELKP
SYLKAASVKKLISRMLHELKAGCIVSHQFEAAMECCNLLLQWHPDDVHLNRERAFIAQQLGCINVAAADLQHFVDNSPHD
PVIEIVKMQLKELSEHAEIYH

Specific function: Not essential for the expression of the invasive phenotype. Required for maximal expression of sirC [H]

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=218, Percent_Identity=32.1100917431193, Blast_Score=117, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29167; Mature: 29036

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKYNLQDGISLPESALDVGAHLGFSNLEAAKWAWFELAGAVLSHYLVDQQQRLNALLHW
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYQDLGFSVRDNYFSTEAADLGTCLITKQGNSTALATVLMLLAKQLDLELEALLLPGNTV
HHHHHCCCHHCCCCCCCHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH
LRSNVAGVVRYHDPLTGKELTKHQLHVLVRGELGNAAELKPSYLKAASVKKLISRMLHEL
HHHCHHEEEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAGCIVSHQFEAAMECCNLLLQWHPDDVHLNRERAFIAQQLGCINVAAADLQHFVDNSPH
HHCCEEHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
DPVIEIVKMQLKELSEHAEIYH
CHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GKYNLQDGISLPESALDVGAHLGFSNLEAAKWAWFELAGAVLSHYLVDQQQRLNALLHW
CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FYQDLGFSVRDNYFSTEAADLGTCLITKQGNSTALATVLMLLAKQLDLELEALLLPGNTV
HHHHHCCCHHCCCCCCCHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCHH
LRSNVAGVVRYHDPLTGKELTKHQLHVLVRGELGNAAELKPSYLKAASVKKLISRMLHEL
HHHCHHEEEEECCCCCCHHHHHHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
KAGCIVSHQFEAAMECCNLLLQWHPDDVHLNRERAFIAQQLGCINVAAADLQHFVDNSPH
HHCCEEHHHHHHHHHHHHHHHHCCCCCCEECHHHHHHHHHHCHHHHHHHHHHHHHCCCCC
DPVIEIVKMQLKELSEHAEIYH
CHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]