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The map label for this gene is yiaD [H]

Identifier: 117919117

GI number: 117919117

Start: 786678

End: 787370

Strand: Direct

Name: yiaD [H]

Synonym: Shewana3_0665

Alternate gene names: 117919117

Gene position: 786678-787370 (Clockwise)

Preceding gene: 117919115

Following gene: 117919118

Centisome position: 15.82

GC content: 53.1

Gene sequence:

>693_bases
ATGATGAAGCCTTCTCTGATCAAATCACTGCCAGCATCTAAGCTTGCGATTGTTGTGGTGACAGGCGCCTTGATTGCGTC
TGGCTGTTCTACAGTCAATCCCTATACCAATGAGCAACAAACGGCAAAAGCAACGACGGGCGCCTTAATTGGTGCGGTTG
CCGGCGCGGCTGTTGGGGTTGCGTCCTCTAGCAAGAGCGACCGTGGTAAAGGTGCTTTAATTGGTGCCGCCTCAGGCGCC
GCCGTCGGTGGTGGTATTGGTTACTACATGGATGTGCAAGAAACCAAACTGCGCCAACAACTGGCCTCGACAGGCGTGAG
TGTGACCCGCGACGGTGACAATATTGTTCTCAATATGCCAAACGAAGTGACCTTTGGTGTCGACCAAACTGAGCTGAGTG
ATGGCGCTAAACGCGTACTTAACTCAGTGGCGCTGGTGGCCAAGGAATACAGCAAGACTCAACTGAACGTATTAGGTTAC
ACCGACAGCAGCGGCTCAGATTCTTACAACCTACGTTTATCACAAGTCCGCGCCAGCGAAGTGGGCAACTACCTGATGAG
CAAAGGCGTGGCTTCTGCTCGCGTTAAATCTAAGGGCATGGGTGAGGCGAGTCCTATCGCATCGAATGCGAATGCCGCAG
GTCGCGCGCAAAACCGTCGAGTGGAAATTGTGTTAACCCCAACGGGGCAATAA

Upstream 100 bases:

>100_bases
CTTATATACTGCGATTTTTTATGGTGTCCTTTGGCGACTTGCCACGCCCTTTGCCTTTTGGCGGGCAAATACCATCATCA
ATCATGTTATGAGGTCATAA

Downstream 100 bases:

>100_bases
TTTCCATAAAATAAGAGTCGCCTACGGGCGACTTTTTACTCTCTGCACTCGCTGATTCTTTGCATTAGGCAACATTTTGC
ATTCGGGGACAATTTGTCCA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMKPSLIKSLPASKLAIVVVTGALIASGCSTVNPYTNEQQTAKATTGALIGAVAGAAVGVASSSKSDRGKGALIGAASGA
AVGGGIGYYMDVQETKLRQQLASTGVSVTRDGDNIVLNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGY
TDSSGSDSYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ

Sequences:

>Translated_230_residues
MMKPSLIKSLPASKLAIVVVTGALIASGCSTVNPYTNEQQTAKATTGALIGAVAGAAVGVASSSKSDRGKGALIGAASGA
AVGGGIGYYMDVQETKLRQQLASTGVSVTRDGDNIVLNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGY
TDSSGSDSYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ
>Mature_230_residues
MMKPSLIKSLPASKLAIVVVTGALIASGCSTVNPYTNEQQTAKATTGALIGAVAGAAVGVASSSKSDRGKGALIGAASGA
AVGGGIGYYMDVQETKLRQQLASTGVSVTRDGDNIVLNMPNEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGY
TDSSGSDSYNLRLSQVRASEVGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=213, Percent_Identity=57.7464788732394, Blast_Score=207, Evalue=3e-55,
Organism=Escherichia coli, GI1787191, Length=76, Percent_Identity=46.0526315789474, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788957, Length=120, Percent_Identity=30.8333333333333, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23444; Mature: 23444

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00659 GLYCOSYL_HYDROL_F5 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKPSLIKSLPASKLAIVVVTGALIASGCSTVNPYTNEQQTAKATTGALIGAVAGAAVGV
CCCCHHHHHCCCCCEEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
ASSSKSDRGKGALIGAASGAAVGGGIGYYMDVQETKLRQQLASTGVSVTRDGDNIVLNMP
CCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEECCCEEEEECC
NEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDSYNLRLSQVRASE
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEHHHHHHHH
VGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ
HHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MMKPSLIKSLPASKLAIVVVTGALIASGCSTVNPYTNEQQTAKATTGALIGAVAGAAVGV
CCCCHHHHHCCCCCEEEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
ASSSKSDRGKGALIGAASGAAVGGGIGYYMDVQETKLRQQLASTGVSVTRDGDNIVLNMP
CCCCCCCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHCCCEEEECCCEEEEECC
NEVTFGVDQTELSDGAKRVLNSVALVAKEYSKTQLNVLGYTDSSGSDSYNLRLSQVRASE
CCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEHHHHHHHH
VGNYLMSKGVASARVKSKGMGEASPIASNANAAGRAQNRRVEIVLTPTGQ
HHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]