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The map label for this gene is yciR [C]

Identifier: 117918998

GI number: 117918998

Start: 638965

End: 640683

Strand: Direct

Name: yciR [C]

Synonym: Shewana3_0544

Alternate gene names: 117918998

Gene position: 638965-640683 (Clockwise)

Preceding gene: 117918997

Following gene: 117918999

Centisome position: 12.85

GC content: 45.38

Gene sequence:

>1719_bases
ATGGATTTACTACTGATCGATGATGATGAAGTCGATAGAACTGCGATTATTCGGGCACTGCGACAGTCCAAATTAGCCTT
CAATGTGGTTGAGGCAAATTGTGCTTTCGATGGCCTTAACTTGGCTCTCGAAAGGCATTTCGACGGTATTTTGTTGGATT
ATCTATTACCCGATGCCAATGGTTTAGAGGTGCTGATCAAACTCAATTCGATGACTCAAGACCAAACTGTGGTGGTGATG
CTGAGTCGTTATGAGGATGAGAAACTGGCGCAGCGTTGTATTGAGCTGGGCGCGCAGGATTTTCTGTTAAAAGATGAAGT
CAATTCACGGATCTTAAGCCGTGCGATTCGTTACGCCAAACAACGTTCCTCCATGGCCTTGGCCCTAAGAAATAGCCATC
AAAAACTCAAAGAGTTGGCTGAGCATGATTCTCTAACCAAATTAGTGAACCGCTACGGGTTTGAACTGTGCCTAAATCGT
GCCATCGCAAGAGCAAAACGCAGCAATGACTTTCTTGCAGTTATTTTGCTCGATCTAGATGATTTTAAAGCAATTAATGA
TACTTTAGGTCATCAAACTGGCGATATCTTACTCGTCAAAGTCGCCTCGCGATTAAGCTCAGTGCTGCGAGATGGTGATG
TGATCGCCCGCTTAGGTGGGGATGAGTTTGTAGTACTCGTGACCGACAATGACTACAAATATTTCCCTATGATAGTCGCC
AATCGCCTGCTTAAGGCCTTTGAGGAGGTTTTCTGCCTGGGTGAAAACGATGTGATGATTGGCGCCAGTATCGGCGTGGC
TTTTTATAATGAGGCCGCCTCCGATAGCTCTGAGTTGATGAAATGCGCCGATATTGCCATGTATCGCGCCAAAAAAATGG
GGCGCAACCAAATTCAGTTTTATTCTGAGGCCTTAGATAAAGAAGTTCGTTACCGTAATCATATCGAGTCCAGCTTGCGC
ATGGCGCTAAAGCAGAATGAATTCAAGGTTTATTATCAGGCACAAGTAGATTCTCAAACCCATCAAGTGATAGGGATGGA
GGCGTTAATCCGTTGGTTGCATCCGCAAGATGGTTTGATTGCACCGGATCAATTCCTATCCATTGCAGAGGAAATTGGTC
TGATGGAAGAAATCGGTGACTGGGTGCTTATCGAAGCCTGTCGTCAAGCGCAGGAATGGCTCACGCGGCTAACCCCCGTT
GGACATAGCTTTACCATTGCGGTGAATTTGTCGGCATCGCAAATTGGACACATTGATCTATATGAAAAAATTGTCCATGC
CCTCGAGGTCACGGGATTAGATGCGAAAGCGCTAGAGCTTGAGATTACCGAAAACAGCTTGATTGAAGAACCCCATGAAC
ATGCCAAGGTGCTCGATAGAATTGCGCAACTTGGAGTACGATTCGCACTCGATGACTTCGGCACAGGCTTTTCATCCCTA
GAACATATAAAGCTCTTTCCAATCAGTGTATTAAAAATTGATAAGAGCTTTATTGCCTCCTACGATAAGGATGACAAAGA
TACGCGGTTGCTCGCGGCATTACTCAATTTCGCCTATGGTTTTAACGTGACATCGGTTGCCGAAGGCATTGAAACGGCTG
AACAAGCCGAGTTTTGCACCGCACGAAATTGCAATGTGCTCCAAGGGTATTTATTTTCGCGGCCCTTAGAAGCGAGCGAA
TTTGAGGCCAAGTACATTACTCCACTACTTACAAAATAA

Upstream 100 bases:

>100_bases
TATGGTGAAAACGGATATTAAGGATGGTTTCAACAACATTTTCAATATGTTGGAAGGTTATTGGCGCATAGTGGAGCTTC
CAACCGTATAGGGTGTGTAT

Downstream 100 bases:

>100_bases
TGACCCTAAATTGTGAAGATTATCTTACGTTTGGCTAGTGCCGAGGTTTTCGTCTGGTGAGGAATATTTTCTTGCTTTAC
ACTCAGCAATAGACAAATAT

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MDLLLIDDDEVDRTAIIRALRQSKLAFNVVEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNSMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILSRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRSNDFLAVILLDLDDFKAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKAFEEVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKQNEFKVYYQAQVDSQTHQVIGMEALIRWLHPQDGLIAPDQFLSIAEEIGLMEEIGDWVLIEACRQAQEWLTRLTPV
GHSFTIAVNLSASQIGHIDLYEKIVHALEVTGLDAKALELEITENSLIEEPHEHAKVLDRIAQLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFIASYDKDDKDTRLLAALLNFAYGFNVTSVAEGIETAEQAEFCTARNCNVLQGYLFSRPLEASE
FEAKYITPLLTK

Sequences:

>Translated_572_residues
MDLLLIDDDEVDRTAIIRALRQSKLAFNVVEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNSMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILSRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRSNDFLAVILLDLDDFKAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKAFEEVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKQNEFKVYYQAQVDSQTHQVIGMEALIRWLHPQDGLIAPDQFLSIAEEIGLMEEIGDWVLIEACRQAQEWLTRLTPV
GHSFTIAVNLSASQIGHIDLYEKIVHALEVTGLDAKALELEITENSLIEEPHEHAKVLDRIAQLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFIASYDKDDKDTRLLAALLNFAYGFNVTSVAEGIETAEQAEFCTARNCNVLQGYLFSRPLEASE
FEAKYITPLLTK
>Mature_572_residues
MDLLLIDDDEVDRTAIIRALRQSKLAFNVVEANCAFDGLNLALERHFDGILLDYLLPDANGLEVLIKLNSMTQDQTVVVM
LSRYEDEKLAQRCIELGAQDFLLKDEVNSRILSRAIRYAKQRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNR
AIARAKRSNDFLAVILLDLDDFKAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVA
NRLLKAFEEVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQFYSEALDKEVRYRNHIESSLR
MALKQNEFKVYYQAQVDSQTHQVIGMEALIRWLHPQDGLIAPDQFLSIAEEIGLMEEIGDWVLIEACRQAQEWLTRLTPV
GHSFTIAVNLSASQIGHIDLYEKIVHALEVTGLDAKALELEITENSLIEEPHEHAKVLDRIAQLGVRFALDDFGTGFSSL
EHIKLFPISVLKIDKSFIASYDKDDKDTRLLAALLNFAYGFNVTSVAEGIETAEQAEFCTARNCNVLQGYLFSRPLEASE
FEAKYITPLLTK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=34.8623853211009, Blast_Score=271, Evalue=7e-74,
Organism=Escherichia coli, GI87081921, Length=455, Percent_Identity=32.3076923076923, Blast_Score=246, Evalue=2e-66,
Organism=Escherichia coli, GI226510982, Length=442, Percent_Identity=29.185520361991, Blast_Score=197, Evalue=2e-51,
Organism=Escherichia coli, GI1786507, Length=262, Percent_Identity=32.4427480916031, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=35.6862745098039, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081980, Length=259, Percent_Identity=32.046332046332, Blast_Score=136, Evalue=3e-33,
Organism=Escherichia coli, GI1787055, Length=442, Percent_Identity=25.3393665158371, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1790496, Length=243, Percent_Identity=28.3950617283951, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=31.5352697095436, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788381, Length=402, Percent_Identity=26.1194029850746, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081743, Length=243, Percent_Identity=27.9835390946502, Blast_Score=109, Evalue=5e-25,
Organism=Escherichia coli, GI145693134, Length=176, Percent_Identity=35.7954545454545, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786584, Length=181, Percent_Identity=34.2541436464088, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=34.1040462427746, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1788849, Length=430, Percent_Identity=24.6511627906977, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=206, Percent_Identity=31.0679611650485, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=37.7245508982036, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=33.879781420765, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=34.3373493975904, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082096, Length=247, Percent_Identity=23.8866396761134, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=169, Percent_Identity=36.094674556213, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=209, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=30.6748466257669, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI1787056, Length=151, Percent_Identity=34.4370860927152, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=127, Percent_Identity=33.0708661417323, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64464; Mature: 64464

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLLIDDDEVDRTAIIRALRQSKLAFNVVEANCAFDGLNLALERHFDGILLDYLLPDAN
CEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHCCCCEEEEHHCCCCC
GLEVLIKLNSMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILSRAIRYAK
CCEEEEEECCCCCCCEEEEEEHHCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHH
QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNDFLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
DFKAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCEEHHHHHH
NRLLKAFEEVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHHHCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDKEVRYRNHIESSLRMALKQNEFKVYYQAQVDSQTHQVIGMEALIRWLHPQDGLI
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
APDQFLSIAEEIGLMEEIGDWVLIEACRQAQEWLTRLTPVGHSFTIAVNLSASQIGHIDL
CHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHCCCHHH
YEKIVHALEVTGLDAKALELEITENSLIEEPHEHAKVLDRIAQLGVRFALDDFGTGFSSL
HHHHHHHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EHIKLFPISVLKIDKSFIASYDKDDKDTRLLAALLNFAYGFNVTSVAEGIETAEQAEFCT
CCEEEEEEHHEEECHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARNCNVLQGYLFSRPLEASEFEAKYITPLLTK
CCCCCHHHHHHHCCCCCCCCCCHHHCCHHCCC
>Mature Secondary Structure
MDLLLIDDDEVDRTAIIRALRQSKLAFNVVEANCAFDGLNLALERHFDGILLDYLLPDAN
CEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHCCCCEEEEHHCCCCC
GLEVLIKLNSMTQDQTVVVMLSRYEDEKLAQRCIELGAQDFLLKDEVNSRILSRAIRYAK
CCEEEEEECCCCCCCEEEEEEHHCCHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHH
QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRSNDFLAVILLDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC
DFKAINDTLGHQTGDILLVKVASRLSSVLRDGDVIARLGGDEFVVLVTDNDYKYFPMIVA
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCEEHHHHHH
NRLLKAFEEVFCLGENDVMIGASIGVAFYNEAASDSSELMKCADIAMYRAKKMGRNQIQF
HHHHHHHHHHHCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
YSEALDKEVRYRNHIESSLRMALKQNEFKVYYQAQVDSQTHQVIGMEALIRWLHPQDGLI
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
APDQFLSIAEEIGLMEEIGDWVLIEACRQAQEWLTRLTPVGHSFTIAVNLSASQIGHIDL
CHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHHCCCHHH
YEKIVHALEVTGLDAKALELEITENSLIEEPHEHAKVLDRIAQLGVRFALDDFGTGFSSL
HHHHHHHHHHCCCCCEEEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
EHIKLFPISVLKIDKSFIASYDKDDKDTRLLAALLNFAYGFNVTSVAEGIETAEQAEFCT
CCEEEEEEHHEEECHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ARNCNVLQGYLFSRPLEASEFEAKYITPLLTK
CCCCCHHHHHHHCCCCCCCCCCHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]