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The map label for this gene is ydhP [H]

Identifier: 117918962

GI number: 117918962

Start: 599727

End: 600944

Strand: Direct

Name: ydhP [H]

Synonym: Shewana3_0508

Alternate gene names: 117918962

Gene position: 599727-600944 (Clockwise)

Preceding gene: 117918961

Following gene: 117918967

Centisome position: 12.06

GC content: 55.01

Gene sequence:

>1218_bases
TTGCAAGCAGTTCAGCCCAACTCTCAGCCCCCAGCTCAAAGCAGCGCGCTTTGGGTGTTACTCGCCTTGGCATTAGGCAC
CTTTGCCCTAGGCACCACAGAATTTGCCGCCATGACCTTAGTGCCTTATATCGCTAGCGATTTAAGTGTCGATGTCGCCC
ATGTGAGTTATGCCATCAGCGCCTATGCCCTTGGGGTGGTGGTAGGCTCGCCCATCATCATGGTGCTGGGGGTGAGGATT
AAGCGGCGCACGCTGTTAATCGCCTTGGCCGCCATGATGGCGGTTGCCAATGGCTTAAGCGCCTTGGCACCCAGCTTGAA
TTGGTTAGTGTTTTTCCGCTTTTTAAGTGGCTTGCCCCATGGAGCTTACTTTGGGGTAGCTATGTTACTGGCGGCGTCCT
TAGTGCCGCCAGAGATGAAGGCTAGGGCGGTTTCTCGGGTGATTATCGGCTTAACCTTAGCCACTATCGTTGGTGTGCCC
TTTGCGACTTGGATGGGGCAAACCGTCGGTTGGCGCTCTGGCATCGGCATAGTGGCGATTATTGCCGCCGTTACCGCCGT
GATGCTGTATTTTCTCGCGCCGAATGTGGCCGTACCGCAAAATGCCAGTCCGAAAAAAGAGCTGCAAACCCTGAAGAATC
GCGAAGTTTGGCTCACGCTCGGCATTGCGGCTATCGGTTTTGGTGGGATTTTCTGTGTGTATACCTATCTGGCCGAGACG
CTGATCCAAGTCACCCAGGTCGAACCCTTTAAAATCCCAGTGATGATGGCAGTCTTTGGGATTGGCGCCACCTTAGGCAC
CTTAGTCTGTGGCTGGGCGGCGGATAAGTCGGCACTGGCGGCGGCATTTTGGTCGCTGGTGTTAAGCACCTTAGTGCTGG
CGCTGTATCCGAGTTTGACGGGATCTTATTGGGCGTTGATGCCGATTGTGTTCTTTGTGGGTTCGGGGATTGGTCTGGCC
ACCACAGTGCAGGCGCGATTAATGGATGTGGCCCCCGATGGGCAGGCCATGACCGGTGCTTTAGTACAATGTGCCTTTAA
CCTTGCCAATGCGATTGGCCCTTGGGTGGGCAGCTTAGTGATCTTATCTGGCCAAGGCATCGCAGCGACGGGTTATGCCG
CAGCACTTTTATCCCTCGGCGGTTTAGTTATGTGGTGGTTAACCCATAGGGAGAGCCGCCGAAGCAGTGCACTGTGCACC
GCTAATTGCATCGACTAA

Upstream 100 bases:

>100_bases
GTGAAGTAATGTTGTTTTAGGCCTTATCGACGGGAGCCCCGAGTGGGCTCCTATTTTTTTCTTAGCCAGTTGTCGTTTTA
TAGAATCGCGGAGAAATCGT

Downstream 100 bases:

>100_bases
GGGATTGATTCAAAAGAATGGGCGGCTAAGGCAACTTGATGCTCTGGCCGCCCATGTGTTTATCATTAACTCGTCGTCTT
AATCCGTTATCCCCGTTGAA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MQAVQPNSQPPAQSSALWVLLALALGTFALGTTEFAAMTLVPYIASDLSVDVAHVSYAISAYALGVVVGSPIIMVLGVRI
KRRTLLIALAAMMAVANGLSALAPSLNWLVFFRFLSGLPHGAYFGVAMLLAASLVPPEMKARAVSRVIIGLTLATIVGVP
FATWMGQTVGWRSGIGIVAIIAAVTAVMLYFLAPNVAVPQNASPKKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLAET
LIQVTQVEPFKIPVMMAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTLVLALYPSLTGSYWALMPIVFFVGSGIGLA
TTVQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAAALLSLGGLVMWWLTHRESRRSSALCT
ANCID

Sequences:

>Translated_405_residues
MQAVQPNSQPPAQSSALWVLLALALGTFALGTTEFAAMTLVPYIASDLSVDVAHVSYAISAYALGVVVGSPIIMVLGVRI
KRRTLLIALAAMMAVANGLSALAPSLNWLVFFRFLSGLPHGAYFGVAMLLAASLVPPEMKARAVSRVIIGLTLATIVGVP
FATWMGQTVGWRSGIGIVAIIAAVTAVMLYFLAPNVAVPQNASPKKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLAET
LIQVTQVEPFKIPVMMAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTLVLALYPSLTGSYWALMPIVFFVGSGIGLA
TTVQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAAALLSLGGLVMWWLTHRESRRSSALCT
ANCID
>Mature_405_residues
MQAVQPNSQPPAQSSALWVLLALALGTFALGTTEFAAMTLVPYIASDLSVDVAHVSYAISAYALGVVVGSPIIMVLGVRI
KRRTLLIALAAMMAVANGLSALAPSLNWLVFFRFLSGLPHGAYFGVAMLLAASLVPPEMKARAVSRVIIGLTLATIVGVP
FATWMGQTVGWRSGIGIVAIIAAVTAVMLYFLAPNVAVPQNASPKKELQTLKNREVWLTLGIAAIGFGGIFCVYTYLAET
LIQVTQVEPFKIPVMMAVFGIGATLGTLVCGWAADKSALAAAFWSLVLSTLVLALYPSLTGSYWALMPIVFFVGSGIGLA
TTVQARLMDVAPDGQAMTGALVQCAFNLANAIGPWVGSLVILSGQGIAATGYAAALLSLGGLVMWWLTHRESRRSSALCT
ANCID

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=387, Percent_Identity=34.3669250645995, Blast_Score=185, Evalue=4e-48,
Organism=Escherichia coli, GI1786595, Length=381, Percent_Identity=27.8215223097113, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI1787808, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI145693198, Length=335, Percent_Identity=22.3880597014925, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 42366; Mature: 42366

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure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EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]