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The map label for this gene is nosD [H]

Identifier: 117918950

GI number: 117918950

Start: 578480

End: 579754

Strand: Direct

Name: nosD [H]

Synonym: Shewana3_0496

Alternate gene names: 117918950

Gene position: 578480-579754 (Clockwise)

Preceding gene: 117918949

Following gene: 117918951

Centisome position: 11.63

GC content: 53.49

Gene sequence:

>1275_bases
ATGTGGCGCAGCTTGCTGCTCGGTTGGCTCTGTAGCTTATCCCTTGTTGGGTTGGCGCAGGAGTTTAGGGTCACAGATAC
TGCGGCTTTGACCCAAGCCCTCGCGCGGGCGCAGGATGGCGACACTGTTGTGCTCGCCACCGCCGTTTACGAAGGTAATT
TTAGTGTCAGCCGCACGATTCATCTTAAGGGCGAAGCGGGTGCAACCCTAGATGCCTTGCGTCAAGGTAGCGCCTTAACC
ATTGCTGCGCCCAAGGTGATAGTCGAAGGGCTGAATATCCGTCACTGGGGGCGGGATCTTTATTACCAGAATGCGGGGAT
CTTGCTGCAACCCGGGGCTGACGAAGTGCTCATTAAGGGCAATCGGCTGGTGGGTGATGGCTTTGGTATCTATGGCGAGC
AGCTGAGTGCACCCCGCATTAGGGAAAACAGTATCAGCGGTAATGGCGCCATTTATGTTTTGGATAGGGGCGATGGCGTC
TTCCTCAAGCATGTGAGCGCGCCGCAAGTGCAAGATAACCATTTTATTTTTGTCCGCGATGGTGTGTATCTCGAGTCGGT
GACAGACAGCCAAATCCACCATAATCAATTCGCTAAGCTGCAATACGGCATCCATTACATGTACACCCGAGGCGATGAAG
CCTCAAACAATCAAGCCATTAGCGTCGATGGCGGTTATGCCTTGATGAACTCGCAGCACATCTTTCTACACCACAACAAG
GTCAGCCAAGCACGGGACTTTGGCATTCTGCTCAATATCACAAACGATGCCCATGTTCAGGCAAATGTCGCGACAGAGGT
GGTCAATCCCCAAGGTTCAGTGGAGCTTGGCAATGAGGGCAAGGGCATTTTTATCTACGCCGCGCAGAATAATCGCATCG
AGGCGAATGAGTTTAGCCATAGCGATACAGGGATCAGCATGGCCATGGGCGGCGAAGCAAACCGCCTCTGGCATAACCGC
ATTGTCGCCAACCAAACCCAAGTCAAATACGTTGGCGAGGCGCAACTCGAGTGGAGTTATCAGGGGCAGGGCAATTACTG
GTCCGAATATCAGGGTTGGGACACGAATGGCGATGGCGTCGGGGATATAGTCCATCGGCCCAACGACAGCTTAGACAAAC
TCTTTTGGCTCTATCCCGAGGCAAAACTCCTGATGGAAAGCCCTGTGGTCTTACTGCTGCGTTGGGTGGAGCGGCAGTTT
CAGCCAACGGCTGCAAGTGGTGTGAGTGACAGCTTTCCCTTAATGGGATGGAAAACCGAGGGAGATGGGCAATGA

Upstream 100 bases:

>100_bases
AGCCGCCGCCGAGGCCTTTGCTCAAGAATACGGTGGCCGCGTGCTTCGTTTCGATGAGATCACCCTCGAATTACTGGCCG
GCGATAAATAGGCGATTGCT

Downstream 100 bases:

>100_bases
GCCATTTTAGCAATGATGCAAGGCATAAACAGGCGCTTACCTTGATGAAAAACGAGGCTTCATCCCAAGGACAAGTGGCG
ATTAAGGCCATTGGGCTTTG

Product: periplasmic copper-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MWRSLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFSVSRTIHLKGEAGATLDALRQGSALT
IAAPKVIVEGLNIRHWGRDLYYQNAGILLQPGADEVLIKGNRLVGDGFGIYGEQLSAPRIRENSISGNGAIYVLDRGDGV
FLKHVSAPQVQDNHFIFVRDGVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIFLHHNK
VSQARDFGILLNITNDAHVQANVATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSHSDTGISMAMGGEANRLWHNR
IVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGVGDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQF
QPTAASGVSDSFPLMGWKTEGDGQ

Sequences:

>Translated_424_residues
MWRSLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFSVSRTIHLKGEAGATLDALRQGSALT
IAAPKVIVEGLNIRHWGRDLYYQNAGILLQPGADEVLIKGNRLVGDGFGIYGEQLSAPRIRENSISGNGAIYVLDRGDGV
FLKHVSAPQVQDNHFIFVRDGVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIFLHHNK
VSQARDFGILLNITNDAHVQANVATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSHSDTGISMAMGGEANRLWHNR
IVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGVGDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQF
QPTAASGVSDSFPLMGWKTEGDGQ
>Mature_424_residues
MWRSLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFSVSRTIHLKGEAGATLDALRQGSALT
IAAPKVIVEGLNIRHWGRDLYYQNAGILLQPGADEVLIKGNRLVGDGFGIYGEQLSAPRIRENSISGNGAIYVLDRGDGV
FLKHVSAPQVQDNHFIFVRDGVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIFLHHNK
VSQARDFGILLNITNDAHVQANVATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSHSDTGISMAMGGEANRLWHNR
IVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGVGDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQF
QPTAASGVSDSFPLMGWKTEGDGQ

Specific function: Involved in copper processing and transport; in the assembly of the copper chromophores of nitrous oxide reductase [H]

COG id: COG3420

COG function: function code P; Nitrous oxidase accessory protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006633
- InterPro:   IPR007742
- InterPro:   IPR022441
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF05048 NosD [H]

EC number: NA

Molecular weight: Translated: 46751; Mature: 46751

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRSLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFSVSRTI
CCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEE
HLKGEAGATLDALRQGSALTIAAPKVIVEGLNIRHWGRDLYYQNAGILLQPGADEVLIKG
EECCCCCCHHHHHHCCCEEEEECCHHEEECCCEEECCCEEEEECCCEEEECCCCEEEEEC
NRLVGDGFGIYGEQLSAPRIRENSISGNGAIYVLDRGDGVFLKHVSAPQVQDNHFIFVRD
CEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEC
GVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIFLHHNK
CEEEECCCCCHHHHHHHEEEEECEEEEEECCCCCCCCCEEEECCCEEEECCCEEEEECCC
VSQARDFGILLNITNDAHVQANVATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSH
CCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCEEECCCCCC
SDTGISMAMGGEANRLWHNRIVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGV
CCCCEEEEECCCCCCEEHHHEECCCCEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCC
GDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQFQPTAASGVSDSFPLMGWKTE
CHHCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
GDGQ
CCCC
>Mature Secondary Structure
MWRSLLLGWLCSLSLVGLAQEFRVTDTAALTQALARAQDGDTVVLATAVYEGNFSVSRTI
CCHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEE
HLKGEAGATLDALRQGSALTIAAPKVIVEGLNIRHWGRDLYYQNAGILLQPGADEVLIKG
EECCCCCCHHHHHHCCCEEEEECCHHEEECCCEEECCCEEEEECCCEEEECCCCEEEEEC
NRLVGDGFGIYGEQLSAPRIRENSISGNGAIYVLDRGDGVFLKHVSAPQVQDNHFIFVRD
CEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEEEEC
GVYLESVTDSQIHHNQFAKLQYGIHYMYTRGDEASNNQAISVDGGYALMNSQHIFLHHNK
CEEEECCCCCHHHHHHHEEEEECEEEEEECCCCCCCCCEEEECCCEEEECCCEEEEECCC
VSQARDFGILLNITNDAHVQANVATEVVNPQGSVELGNEGKGIFIYAAQNNRIEANEFSH
CCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCEEECCCCCEEEEEEECCCEEECCCCCC
SDTGISMAMGGEANRLWHNRIVANQTQVKYVGEAQLEWSYQGQGNYWSEYQGWDTNGDGV
CCCCEEEEECCCCCCEEHHHEECCCCEEEEEECEEEEEEECCCCCCCCCCCCCCCCCCCC
GDIVHRPNDSLDKLFWLYPEAKLLMESPVVLLLRWVERQFQPTAASGVSDSFPLMGWKTE
CHHCCCCCCCCCCEEEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
GDGQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]