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The map label for this gene is nrfC [H]

Identifier: 117918948

GI number: 117918948

Start: 576222

End: 576929

Strand: Direct

Name: nrfC [H]

Synonym: Shewana3_0493

Alternate gene names: 117918948

Gene position: 576222-576929 (Clockwise)

Preceding gene: 117918947

Following gene: 117918949

Centisome position: 11.59

GC content: 52.54

Gene sequence:

>708_bases
GTGAGTGAAAATATAGAGAGACGGAGGTTCCTTAAAAGCGCTGGCATGTGCTCTTTGATGTTAACGCCTTTAGCCGGGTG
TTCGGTCAAAGAAGAGTCCGACGGCGCCCATAAGCCCCATTACGTCATGGTCTTTGACCAAAACAAGTGTGTCGGCTGTG
GCGACTGTAAAACCGCCTGTAATCAAGCCAACCAGTTGCCCGAAGGCAAGTCACGGGTGCTGCTCGAGCAGCAGAGTGGC
CGTGTCGAAGGTCAGCCTTGTCCGCACTGCGGCAAGATGAGCTGTGACTGTGAACGTAAGTTTGTGCGGGTTTCCTGCCA
GCAATGCAAGAACGCCCCCTGTGTCACAGTTTGTCCGACTGGCGCGGCGCACCGCGACGCGAAAACGGGCATTGTGACTA
TGGATGCGAGCAAATGCGCCGGCTGTAAATACTGCATTGGTGCTTGTCCTTACAATGCCCGTTACATCAACAGCGATACG
GATGTGGCCGATAACTGCGATTTCTGTTTGAACAGCAAGTTAGCTAAGGGCGAATTACCCGCCTGTGTGCAGAGCTGTAA
ATACGATGCGCTGATCTTCGGTGATGCCAACGATCCTCAATCCTACGTAAGCAAACTCTTAGCGGTAAAAGACTCAGTGC
GCATTAAGCCGCAGTTTGGCACCGAGCCGAGCTTACGTTACATACCAATCGTCAAACTGGGAGTGTAA

Upstream 100 bases:

>100_bases
AAAGTGGATATTAATCAAGTCGCTAGCCATTTTCAGGCATGTTGGAACGATAACGATATAAATAAAAGCGTCGGTATAAA
ACCGATAGATGGAGGATGTT

Downstream 100 bases:

>100_bases
ATATGGATACCAGTATGGAATTTACCTTAGGCCTCTCCCAAGGCGTCGCTTGGCCTTGGCCGATTGCGGTGTATTTGTTC
TTCGCGGGCATCTCGGGCGG

Product: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MSENIERRRFLKSAGMCSLMLTPLAGCSVKEESDGAHKPHYVMVFDQNKCVGCGDCKTACNQANQLPEGKSRVLLEQQSG
RVEGQPCPHCGKMSCDCERKFVRVSCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDT
DVADNCDFCLNSKLAKGELPACVQSCKYDALIFGDANDPQSYVSKLLAVKDSVRIKPQFGTEPSLRYIPIVKLGV

Sequences:

>Translated_235_residues
MSENIERRRFLKSAGMCSLMLTPLAGCSVKEESDGAHKPHYVMVFDQNKCVGCGDCKTACNQANQLPEGKSRVLLEQQSG
RVEGQPCPHCGKMSCDCERKFVRVSCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDT
DVADNCDFCLNSKLAKGELPACVQSCKYDALIFGDANDPQSYVSKLLAVKDSVRIKPQFGTEPSLRYIPIVKLGV
>Mature_234_residues
SENIERRRFLKSAGMCSLMLTPLAGCSVKEESDGAHKPHYVMVFDQNKCVGCGDCKTACNQANQLPEGKSRVLLEQQSGR
VEGQPCPHCGKMSCDCERKFVRVSCQQCKNAPCVTVCPTGAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTD
VADNCDFCLNSKLAKGELPACVQSCKYDALIFGDANDPQSYVSKLLAVKDSVRIKPQFGTEPSLRYIPIVKLGV

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=224, Percent_Identity=41.5178571428571, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI226510944, Length=199, Percent_Identity=40.2010050251256, Blast_Score=146, Evalue=9e-37,
Organism=Escherichia coli, GI1787872, Length=194, Percent_Identity=31.9587628865979, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789370, Length=225, Percent_Identity=31.5555555555556, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787122, Length=194, Percent_Identity=31.4432989690722, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787749, Length=167, Percent_Identity=26.9461077844311, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI2367245, Length=162, Percent_Identity=29.0123456790123, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787740, Length=96, Percent_Identity=33.3333333333333, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789067, Length=174, Percent_Identity=30.4597701149425, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787478, Length=96, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787963, Length=177, Percent_Identity=26.5536723163842, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790326, Length=174, Percent_Identity=25.2873563218391, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082179, Length=156, Percent_Identity=31.4102564102564, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25514; Mature: 25382

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
11.9 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
11.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENIERRRFLKSAGMCSLMLTPLAGCSVKEESDGAHKPHYVMVFDQNKCVGCGDCKTAC
CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
NQANQLPEGKSRVLLEQQSGRVEGQPCPHCGKMSCDCERKFVRVSCQQCKNAPCVTVCPT
HHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
GAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTDVADNCDFCLNSKLAKGELP
CCCCCCCCCCEEEECCHHCCCCCCEEECCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCH
ACVQSCKYDALIFGDANDPQSYVSKLLAVKDSVRIKPQFGTEPSLRYIPIVKLGV
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
SENIERRRFLKSAGMCSLMLTPLAGCSVKEESDGAHKPHYVMVFDQNKCVGCGDCKTAC
CCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHH
NQANQLPEGKSRVLLEQQSGRVEGQPCPHCGKMSCDCERKFVRVSCQQCKNAPCVTVCPT
HHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
GAAHRDAKTGIVTMDASKCAGCKYCIGACPYNARYINSDTDVADNCDFCLNSKLAKGELP
CCCCCCCCCCEEEECCHHCCCCCCEEECCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCH
ACVQSCKYDALIFGDANDPQSYVSKLLAVKDSVRIKPQFGTEPSLRYIPIVKLGV
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEECCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]