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The map label for this gene is cycH [H]

Identifier: 117918947

GI number: 117918947

Start: 575461

End: 576135

Strand: Direct

Name: cycH [H]

Synonym: Shewana3_0492

Alternate gene names: 117918947

Gene position: 575461-576135 (Clockwise)

Preceding gene: 117918946

Following gene: 117918948

Centisome position: 11.57

GC content: 54.22

Gene sequence:

>675_bases
ATGGCAAGTTTAGGATTCACCATTGCACTGCTGTTAAGCGGATTTGTGGCTTGGATTTTCTGGCAGCACGCGCGTTTAAA
CCAGCGGCAAACGTTGGTGGGAGAGTCTCAAGTCTCCCATGGCGTGCCTGTGCTGTGCAGTGTGCTTCTGCTATTGCTCA
CGCTCGCCATCTATAGCCAAACGGGGCGTTATCAGGATTGGGATACAGGCAAGCTCGATGAAAACATTGACTATTTAGTG
GCTGCCGACATCACCAAAGCCCTGCGCCTCGTGGATGAACAACCGCAAAACCCGTTGGCATTACAGGCGCTTGCCGAGGC
TTACAGCGCGGGTGGCTTATATGCCGATGCGGTGCTGACCCTAGACCAACTGCTCGCATTGGTGGGGGAGGATGCTGAGG
TGCTCGGCGCTAAGGCAAATGCCCTCTATTACCGCGATGGTCGGCAAATGACCGCAGAGACCCAAGCACTGATTGCACAG
ATCTTGGCGCTTGCGCCCTTTGAGCCGCAGACGCGGATGCTACAGGCCAACGACGCCTATCTTCATGGGCGCTACCAAGA
GGCGATAGACCATTGGCAAGCATTACTGGCGCAGCCAAGGGCAGAAATTAATCGTGAGGCCCTGTTAAACGCCATCGGCA
AGGCCCAAAGCAAATTGAATGAAAGTGGATATTAA

Upstream 100 bases:

>100_bases
GAAGCCCGCATGATGGGTATGATGCCAGCCCACTAAGGGCTAAGCATAGGCTTAGGTTCAGTGAGTGATGAACTTGGATA
GTCGAGCGTTGAGGTAAAGC

Downstream 100 bases:

>100_bases
TCAAGTCGCTAGCCATTTTCAGGCATGTTGGAACGATAACGATATAAATAAAAGCGTCGGTATAAAACCGATAGATGGAG
GATGTTGTGAGTGAAAATAT

Product: formate-dependent nitrite reductase, NrfG protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MASLGFTIALLLSGFVAWIFWQHARLNQRQTLVGESQVSHGVPVLCSVLLLLLTLAIYSQTGRYQDWDTGKLDENIDYLV
AADITKALRLVDEQPQNPLALQALAEAYSAGGLYADAVLTLDQLLALVGEDAEVLGAKANALYYRDGRQMTAETQALIAQ
ILALAPFEPQTRMLQANDAYLHGRYQEAIDHWQALLAQPRAEINREALLNAIGKAQSKLNESGY

Sequences:

>Translated_224_residues
MASLGFTIALLLSGFVAWIFWQHARLNQRQTLVGESQVSHGVPVLCSVLLLLLTLAIYSQTGRYQDWDTGKLDENIDYLV
AADITKALRLVDEQPQNPLALQALAEAYSAGGLYADAVLTLDQLLALVGEDAEVLGAKANALYYRDGRQMTAETQALIAQ
ILALAPFEPQTRMLQANDAYLHGRYQEAIDHWQALLAQPRAEINREALLNAIGKAQSKLNESGY
>Mature_223_residues
ASLGFTIALLLSGFVAWIFWQHARLNQRQTLVGESQVSHGVPVLCSVLLLLLTLAIYSQTGRYQDWDTGKLDENIDYLVA
ADITKALRLVDEQPQNPLALQALAEAYSAGGLYADAVLTLDQLLALVGEDAEVLGAKANALYYRDGRQMTAETQALIAQI
LALAPFEPQTRMLQANDAYLHGRYQEAIDHWQALLAQPRAEINREALLNAIGKAQSKLNESGY

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=122, Percent_Identity=36.8852459016393, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24624; Mature: 24493

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLGFTIALLLSGFVAWIFWQHARLNQRQTLVGESQVSHGVPVLCSVLLLLLTLAIYSQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TGRYQDWDTGKLDENIDYLVAADITKALRLVDEQPQNPLALQALAEAYSAGGLYADAVLT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
LDQLLALVGEDAEVLGAKANALYYRDGRQMTAETQALIAQILALAPFEPQTRMLQANDAY
HHHHHHHHCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHEECCCHH
LHGRYQEAIDHWQALLAQPRAEINREALLNAIGKAQSKLNESGY
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
ASLGFTIALLLSGFVAWIFWQHARLNQRQTLVGESQVSHGVPVLCSVLLLLLTLAIYSQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
TGRYQDWDTGKLDENIDYLVAADITKALRLVDEQPQNPLALQALAEAYSAGGLYADAVLT
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHH
LDQLLALVGEDAEVLGAKANALYYRDGRQMTAETQALIAQILALAPFEPQTRMLQANDAY
HHHHHHHHCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHEECCCHH
LHGRYQEAIDHWQALLAQPRAEINREALLNAIGKAQSKLNESGY
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA