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The map label for this gene is ydiK [C]

Identifier: 117918932

GI number: 117918932

Start: 554705

End: 555811

Strand: Direct

Name: ydiK [C]

Synonym: Shewana3_0477

Alternate gene names: 117918932

Gene position: 554705-555811 (Clockwise)

Preceding gene: 117918931

Following gene: 117918935

Centisome position: 11.16

GC content: 51.4

Gene sequence:

>1107_bases
ATGGCACAGATTATCAGTAATGCTGCGGTGGGTCGTACCCTATTGATTTTATTGCTGTGTGCTGGTGTTTTCTTTTTTAT
CGATTTTTTAGTTCCCGCCTTGGCCGCCCTGATCGTCTGCTTCTCCAGTTGGCCGTTGTACCAAAAATTAATGGCTAAAT
GCGGTGGTCGCTCGGCGCTGTCTGCCACAATCGCGTTGGTCTTGATTATTGTTGGGCTTATCACGCCGCTTATTTTTGTA
TTTTCCTATGCATTACAAGAGATTCGAGCCTGGGTGGAGTGGCTGGTGTATGCCAACCAGCATGGCGCTCCCGTGCCGCT
GTGGATTAAGGATTTACCTTGGATTGGTGAGTGGCTTACCCTGCAATGGCAGCAGTTTATCGGTGAACCCCATGAGCTAG
GCAAGATAGTCAGCGCCATTAGCGGTCAGAATCTGAGTGGTATTTCTCGCTGGGTACTGCAATTGGGCTGGAATACCTTA
GGCCTGTTGCTGACTCTTCTCTTTATGCTGATCACCTTGTTTTTCTTATATAAAGATGGCGAGTCGGTCGCCAAACAGCT
GGATATTGTCGGCGAGCGCATTCTTCCTGCACGCTGGCATCGATTCTCCCGTGTGGTGCCTGCGACTGTGAGTTCAACCG
TTATCGGCATGACGCTTATCGCCATCGGCGAGGGCATAGTGCTGGGGATTGCTTACTGGATTGCTGGCGTGCCTTCGGCC
GTGGCCTTTGGGGTGTTGACCGCGTTTATGGCCTTAGTGCCCGGCGGCGCGCCAACCATGTTCACTTTGATCTCACTGTA
TTTAGTTGGCACCGGCGATATGACTGCGGGAGTGGGCTTATTCCTCTGGGGCAGTATCGAGCTGTTTATTGTCGATAAAA
CCCTAAGACCTAATCTGGTTGGCGGGCCAATCAAATTACCTTTCCTGCCGACCTTTTTCGGTTTGATTGGCGGAGTGAAA
ACCATGGGGTTCGTTGGCCTGTTTGTCGGCCCGGTATTGATGGCGTTGCTGATTGCTATCTGGCGCGAGTGGTTAAGGGA
TGAGCCTGATCATACGCTGGTAACCGAATCCCTTGAATCCCCAAGGGAGCAAGGTCAGTCAAGCTAG

Upstream 100 bases:

>100_bases
AACTGGCTCACAGAATGGGGAACACCCAAAGGCTGGTTGTTGCTTGGCACTCTGCCGAGTTTTCCACCTTGTTGTTGGAT
TCTATTGTGGGAGTATGTGG

Downstream 100 bases:

>100_bases
AGCTGAGTGAGCGCTTGTTTACGCTCTTCGGTGTAATACCACCAAGGTTTAGGGTCGTCACCCGCCATAAAGCGGGTGAC
AGATATAAACACATCCAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MAQIISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSATIALVLIIVGLITPLIFV
FSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQWQQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTL
GLLLTLLFMLITLFFLYKDGESVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSA
VAFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLPFLPTFFGLIGGVK
TMGFVGLFVGPVLMALLIAIWREWLRDEPDHTLVTESLESPREQGQSS

Sequences:

>Translated_368_residues
MAQIISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSATIALVLIIVGLITPLIFV
FSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQWQQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTL
GLLLTLLFMLITLFFLYKDGESVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSA
VAFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLPFLPTFFGLIGGVK
TMGFVGLFVGPVLMALLIAIWREWLRDEPDHTLVTESLESPREQGQSS
>Mature_367_residues
AQIISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSATIALVLIIVGLITPLIFVF
SYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQWQQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTLG
LLLTLLFMLITLFFLYKDGESVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAV
AFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGPIKLPFLPTFFGLIGGVKT
MGFVGLFVGPVLMALLIAIWREWLRDEPDHTLVTESLESPREQGQSS

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1787979, Length=314, Percent_Identity=23.2484076433121, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 40154; Mature: 40023

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQIISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSAL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
SATIALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHH
LQWQQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDG
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCH
ESVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
VAFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCCC
GGPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDEPDHTLVTESLES
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
PREQGQSS
HHHCCCCC
>Mature Secondary Structure 
AQIISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHH
SATIALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHH
LQWQQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDG
HHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCH
ESVAKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHH
VAFGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCCC
GGPIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDEPDHTLVTESLES
CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
PREQGQSS
HHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12522265 [H]