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The map label for this gene is ypfJ [H]

Identifier: 117918918

GI number: 117918918

Start: 536825

End: 537703

Strand: Direct

Name: ypfJ [H]

Synonym: Shewana3_0462

Alternate gene names: 117918918

Gene position: 536825-537703 (Clockwise)

Preceding gene: 117918917

Following gene: 117918919

Centisome position: 10.8

GC content: 54.27

Gene sequence:

>879_bases
ATGCGTTGGCGTGACAGTGACCGTAGCTCCAATATCGAAGACAGACGTGACCAACAGATGGCGTCGGCGGGTGTGCCCAG
TGCGCTCCTGCTGCGCTTGCTGCCTTTTCTGCTTCGCACCAAAATCGGCCGAGTGATATTGCTACTGGGCGGGCTATATT
TTGCGTTTCAATATTTTACTGGCGGATTATCCCTAGACCCGAGCAATCAAGCGGGGTTTAGCCAGTCACAATCGGCCAGC
AATACCGCGGCTCAAGATGAAAATGCCCAGTTTGTGGCGGCGATCCTCGGCACAACCGAAACTGTCTGGAATCAATTGCT
ACAAGGGCGATATGTCGAGCCCAAACTGGTGCTTTATCGCAATATGACCTCGACGGGATGCGGTATGGGGCAGGCGCAAT
CTGGGCCTTTTTATTGCCCCGCAGATAGCAAAGTTTATATCGACTTAAGTTTTCTCGAGGAGCTGAAAAAACTCGGGGCG
CCGGGAGATTTCGCCTTTGCCTATGTGATTGCCCACGAGGTGGGCCACCATGTGCAGAACCTACTCGGCACCAGCACTAA
AGTGCGTCAGGCGCAGCAAGCCGCTGGCAAGGCGCAGGCCAATCAACTGAGTGTTGCCCTCGAATTGCAAGCCGACTGTT
ATGCTGGCGTGTGGGGGCATTATGTCGACAGACAGCTCAATCTGCTCGAAGCTGGTGACGTAGAAGAAGGCATTGCCGCA
GCAAGTGCCGTGGGGGATGACCGTCTGCAAAAAATGGCGGGGCGCGCTGTGCAACCCGAAGCCTTTACCCATGGCAGTTC
GGCGGACAGGGTAAAATGGTTTAAGACGGGTTTTGCCTCTGGCAAGCTTGCCAGTTGTAATACCTTTAATCGCAACTAG

Upstream 100 bases:

>100_bases
TGTTTTTACGCTCGTTAAAAGCGACGCCCGCCGAGCAGAATGATCCTAAATAACGGCTACACTGAAATCTAGTTCCCATA
CCCATAGCCTAGGAAATCCA

Downstream 100 bases:

>100_bases
TGATACACAGCCTTAGCGTGGGATTGAGACATGGCATTTGAAGATAGGTTTCGGCTCAGTAGCCATGCAGTAATCATTAA
CGATGCGGGCCAAGTGTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MRWRDSDRSSNIEDRRDQQMASAGVPSALLLRLLPFLLRTKIGRVILLLGGLYFAFQYFTGGLSLDPSNQAGFSQSQSAS
NTAAQDENAQFVAAILGTTETVWNQLLQGRYVEPKLVLYRNMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLEELKKLGA
PGDFAFAYVIAHEVGHHVQNLLGTSTKVRQAQQAAGKAQANQLSVALELQADCYAGVWGHYVDRQLNLLEAGDVEEGIAA
ASAVGDDRLQKMAGRAVQPEAFTHGSSADRVKWFKTGFASGKLASCNTFNRN

Sequences:

>Translated_292_residues
MRWRDSDRSSNIEDRRDQQMASAGVPSALLLRLLPFLLRTKIGRVILLLGGLYFAFQYFTGGLSLDPSNQAGFSQSQSAS
NTAAQDENAQFVAAILGTTETVWNQLLQGRYVEPKLVLYRNMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLEELKKLGA
PGDFAFAYVIAHEVGHHVQNLLGTSTKVRQAQQAAGKAQANQLSVALELQADCYAGVWGHYVDRQLNLLEAGDVEEGIAA
ASAVGDDRLQKMAGRAVQPEAFTHGSSADRVKWFKTGFASGKLASCNTFNRN
>Mature_292_residues
MRWRDSDRSSNIEDRRDQQMASAGVPSALLLRLLPFLLRTKIGRVILLLGGLYFAFQYFTGGLSLDPSNQAGFSQSQSAS
NTAAQDENAQFVAAILGTTETVWNQLLQGRYVEPKLVLYRNMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLEELKKLGA
PGDFAFAYVIAHEVGHHVQNLLGTSTKVRQAQQAAGKAQANQLSVALELQADCYAGVWGHYVDRQLNLLEAGDVEEGIAA
ASAVGDDRLQKMAGRAVQPEAFTHGSSADRVKWFKTGFASGKLASCNTFNRN

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=299, Percent_Identity=49.4983277591973, Blast_Score=271, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31723; Mature: 31723

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWRDSDRSSNIEDRRDQQMASAGVPSALLLRLLPFLLRTKIGRVILLLGGLYFAFQYFT
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLSLDPSNQAGFSQSQSASNTAAQDENAQFVAAILGTTETVWNQLLQGRYVEPKLVLYR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEE
NMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLEELKKLGAPGDFAFAYVIAHEVGHHVQN
CCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLGTSTKVRQAQQAAGKAQANQLSVALELQADCYAGVWGHYVDRQLNLLEAGDVEEGIAA
HHCCHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ASAVGDDRLQKMAGRAVQPEAFTHGSSADRVKWFKTGFASGKLASCNTFNRN
HHHCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWRDSDRSSNIEDRRDQQMASAGVPSALLLRLLPFLLRTKIGRVILLLGGLYFAFQYFT
CCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLSLDPSNQAGFSQSQSASNTAAQDENAQFVAAILGTTETVWNQLLQGRYVEPKLVLYR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCCCCCCEEEEEE
NMTSTGCGMGQAQSGPFYCPADSKVYIDLSFLEELKKLGAPGDFAFAYVIAHEVGHHVQN
CCCCCCCCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LLGTSTKVRQAQQAAGKAQANQLSVALELQADCYAGVWGHYVDRQLNLLEAGDVEEGIAA
HHCCHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
ASAVGDDRLQKMAGRAVQPEAFTHGSSADRVKWFKTGFASGKLASCNTFNRN
HHHCCHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]