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The map label for this gene is ydcO [H]

Identifier: 117918777

GI number: 117918777

Start: 354937

End: 356127

Strand: Direct

Name: ydcO [H]

Synonym: Shewana3_0320

Alternate gene names: 117918777

Gene position: 354937-356127 (Clockwise)

Preceding gene: 117918773

Following gene: 117918779

Centisome position: 7.14

GC content: 53.65

Gene sequence:

>1191_bases
ATGATGTGGCGCGAGGCTTTGGGACTATCAAAAATATCGGCGGGCTTTATTGCCGTGCTGGTGGGCTACAGCAGTTCGGC
GGTGATTATCCTGCAGGCGGCGGACGCTGTGGGCGCGACATCGGCACAAATGAGTTCATGGCTGTGGGCCTTAGGTGTCG
GCATGGGGCTCACCAGTATTGGTCTGTCTCTCTACTATAAAAATCCGGTACTTACGGCATGGTCGACACCTGGGGCGGCG
CTGATGGTCAGCAGCCTAGCGGGATTGAGTATCCACGAAGCCGTAGGTGCCTTCCTTATTAGCTCTTTGTTGATTACCCT
CTGCGGCTTGACAGGCTGGATGGATAAGCTTATTCGTATCATGCCACCCTCGGTGGCAGCGGCCATGTTAGCGGGGGTTT
TATTGCAGTTTGGCTTAGGGCTGTTTCAAGCCATGCAGACTCAGCTGAGTTTAATCCTCTTGATGTTACTAGTCTTTGTT
GTGCTTAAGCCCTGGGCGCCGCGCTACATTATGTTGCTCACCCTCGTTGCGGGGATAGGGATGAGCTATCAATTGGATTT
ATTGCAACTCGATAAGTTTGAGCTGCAATTTGCTGCCCCCGTATGGATAGCGCCTACGTTTTCTTTAGCTTGCGTGGTGG
GAGTGGCGCTACCCTTATTTGTGGTGACTATGGCTTCGCAGAATATGCCAGGGGTGGCCGCGCTCCACGGCCATGGTTAT
CGCCCGCCTATCTCACCATTAATTACCGTGACGGGGCTGATGGGCGTATTGTTTGCACCCTTTGGCGGCTTTGCCTTCAA
CCTATCCGCCATTACGGCGGCCATTTGCATGGGTAAAGAGGCGGACCCTAACCCCGTAACTCGTTATTGGGCGGCGGTGT
GGGGCGGAATCTTTTATTTGATAACAGGTCTACTCGGCGCAACTGTGGTGGGGCTCTTCGCCGCATTTCCGAAGGAATTG
GTGCTGGCGATTGCAGGATTAGCCCTGCTTGGCACCATAGGTAACAGTCTGACCGCTGCGCTCGCGGATAACGACGAGCG
AGAGGTGGCTGTGATTACGTTTCTCGTCACCGCCTCGGGTGTGAGTATATTGGGGATCGGCAGTGCCTTCTGGGGATTAT
TACTCGGATTTTTAATGCATTACTGGCACAAGCATCGCGCCTTAACCACAGCTAAACAGGCAAAAGCTTAG

Upstream 100 bases:

>100_bases
TGTACGTTATAACGCACAAGTGCTATCTTGTCCATTGTGTGCGTTATAGCGCACGATGAGTGGTTCGATGATCAAGACAA
AGGTAGACAGAGGAGTAGGG

Downstream 100 bases:

>100_bases
CTGTGGTTAGGTCTAGATTGAGGTTCGCCACCTTAGTGGATTGATGTGTGTTGAGGCCTAGAGCTTTTTGGTCATAAACA
GGCTATTGGGGTCGAGCACG

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 396

Protein sequence:

>396_residues
MMWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATSAQMSSWLWALGVGMGLTSIGLSLYYKNPVLTAWSTPGAA
LMVSSLAGLSIHEAVGAFLISSLLITLCGLTGWMDKLIRIMPPSVAAAMLAGVLLQFGLGLFQAMQTQLSLILLMLLVFV
VLKPWAPRYIMLLTLVAGIGMSYQLDLLQLDKFELQFAAPVWIAPTFSLACVVGVALPLFVVTMASQNMPGVAALHGHGY
RPPISPLITVTGLMGVLFAPFGGFAFNLSAITAAICMGKEADPNPVTRYWAAVWGGIFYLITGLLGATVVGLFAAFPKEL
VLAIAGLALLGTIGNSLTAALADNDEREVAVITFLVTASGVSILGIGSAFWGLLLGFLMHYWHKHRALTTAKQAKA

Sequences:

>Translated_396_residues
MMWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATSAQMSSWLWALGVGMGLTSIGLSLYYKNPVLTAWSTPGAA
LMVSSLAGLSIHEAVGAFLISSLLITLCGLTGWMDKLIRIMPPSVAAAMLAGVLLQFGLGLFQAMQTQLSLILLMLLVFV
VLKPWAPRYIMLLTLVAGIGMSYQLDLLQLDKFELQFAAPVWIAPTFSLACVVGVALPLFVVTMASQNMPGVAALHGHGY
RPPISPLITVTGLMGVLFAPFGGFAFNLSAITAAICMGKEADPNPVTRYWAAVWGGIFYLITGLLGATVVGLFAAFPKEL
VLAIAGLALLGTIGNSLTAALADNDEREVAVITFLVTASGVSILGIGSAFWGLLLGFLMHYWHKHRALTTAKQAKA
>Mature_396_residues
MMWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATSAQMSSWLWALGVGMGLTSIGLSLYYKNPVLTAWSTPGAA
LMVSSLAGLSIHEAVGAFLISSLLITLCGLTGWMDKLIRIMPPSVAAAMLAGVLLQFGLGLFQAMQTQLSLILLMLLVFV
VLKPWAPRYIMLLTLVAGIGMSYQLDLLQLDKFELQFAAPVWIAPTFSLACVVGVALPLFVVTMASQNMPGVAALHGHGY
RPPISPLITVTGLMGVLFAPFGGFAFNLSAITAAICMGKEADPNPVTRYWAAVWGGIFYLITGLLGATVVGLFAAFPKEL
VLAIAGLALLGTIGNSLTAALADNDEREVAVITFLVTASGVSILGIGSAFWGLLLGFLMHYWHKHRALTTAKQAKA

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=364, Percent_Identity=51.9230769230769, Blast_Score=349, Evalue=1e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41647; Mature: 41647

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: PS00079 MULTICOPPER_OXIDASE1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATSAQMSSWLWALGVGMGLTSI
CCCHHHHCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
GLSLYYKNPVLTAWSTPGAALMVSSLAGLSIHEAVGAFLISSLLITLCGLTGWMDKLIRI
HHEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPPSVAAAMLAGVLLQFGLGLFQAMQTQLSLILLMLLVFVVLKPWAPRYIMLLTLVAGIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
MSYQLDLLQLDKFELQFAAPVWIAPTFSLACVVGVALPLFVVTMASQNMPGVAALHGHGY
CCEEEHHHHHCHHHEEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
RPPISPLITVTGLMGVLFAPFGGFAFNLSAITAAICMGKEADPNPVTRYWAAVWGGIFYL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
ITGLLGATVVGLFAAFPKELVLAIAGLALLGTIGNSLTAALADNDEREVAVITFLVTASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHCCCCCCCEEEEEEEHHHCC
VSILGIGSAFWGLLLGFLMHYWHKHRALTTAKQAKA
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMWREALGLSKISAGFIAVLVGYSSSAVIILQAADAVGATSAQMSSWLWALGVGMGLTSI
CCCHHHHCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
GLSLYYKNPVLTAWSTPGAALMVSSLAGLSIHEAVGAFLISSLLITLCGLTGWMDKLIRI
HHEEEECCCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MPPSVAAAMLAGVLLQFGLGLFQAMQTQLSLILLMLLVFVVLKPWAPRYIMLLTLVAGIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
MSYQLDLLQLDKFELQFAAPVWIAPTFSLACVVGVALPLFVVTMASQNMPGVAALHGHGY
CCEEEHHHHHCHHHEEEECCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
RPPISPLITVTGLMGVLFAPFGGFAFNLSAITAAICMGKEADPNPVTRYWAAVWGGIFYL
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
ITGLLGATVVGLFAAFPKELVLAIAGLALLGTIGNSLTAALADNDEREVAVITFLVTASG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEHHCCCCCCCEEEEEEEHHHCC
VSILGIGSAFWGLLLGFLMHYWHKHRALTTAKQAKA
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]