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The map label for this gene is birA [H]

Identifier: 117918641

GI number: 117918641

Start: 222366

End: 223325

Strand: Direct

Name: birA [H]

Synonym: Shewana3_0183

Alternate gene names: 117918641

Gene position: 222366-223325 (Clockwise)

Preceding gene: 117918640

Following gene: 117918643

Centisome position: 4.47

GC content: 48.75

Gene sequence:

>960_bases
ATGTCTGATAACTGGGTGAGAAAACGCGAAATACTGGGATTGCTGTCGAGCGAACATTTTGTCTCGGGTGAAGAATTGGC
GACACAACTGGGTGTTTCTCGTGCGGCGGTGAGTAAGCATGTGGATGCTTTGGAAGATTACGGCGTGGCAATTTACAGTG
TCAAAGGCCGTGGTTACAAGTTAGCGAACCCCATCTCCCTCATCGACTCAGCGCGGTTAATTCAGTCGATTGATAATCGC
TGCTTTTATTTTGATGAGATCCCTAGTACTAACGGATTTATGTTAAGTCATACGGGTGAGCTTAAGAGTGGCGACCTGTG
TGTCGCGGAGTACCAGTCGGCAGGGCGAGGTCGTCGCGGCCGTACTTGGGTTTCTCCATATGGGCATCACTTATATTTCT
CGCAGTTTTGGTCATTCCCCCAGGGGATGGCGCAGGCGATGGGCTTAAGCCTAGTGGTGGCTTGTAGTTTGGTCGAGGTA
TTGAAATCCTTTGGGGTAGATAATATCGGCGTGAAATGGCCAAACGACATTTACCTGAATTATAAAAAGCTTGCTGGGAT
TTTAATTGAAATGTCAGGTCAGGCGGACAGCGAGTGCCAATTGATCATTGGTATTGGCGTTAATATGGCCATGTCAGAAG
ACCAAGGAAAAGGCATAGACCAGCCTTGGAGCGATTTATCCGCGTTAGCGACTATGCCGAATAAAACGGACCTCGTGATT
GCGCTGCAAAAGCAGCTGAAGAAAGACATTCAACTCTTTGAGCGAGAAGGACTGGCGGCATTCAAACTGCGTTGGCAAGC
GGCTGATCTATTCTATGGCAAAGAGATCCGTTTGCTCATGGGTGAAAATCATGTTGAGGGTATTTGCCGCGGTGTCGACG
AACAGGGCGCAGTGCTACTTGAAACCGCCGATGGCACACAGGCATACATCGGCGGTGAAATCAGTTTAAGACCAAGATAG

Upstream 100 bases:

>100_bases
CGATTAGCATTGCATGTGATTACGAGAGTGAATGAGGTTTTTGGTGTTAAGCTCGAAGCGGAGCCAAGAATTATGGGATT
AACAGGGGAGACGAGTCTCG

Downstream 100 bases:

>100_bases
ATTATTTGCGTAACAATACGTGGGACATCAAGTGATCCTGGCCTTTTTGCAGGATCAGATGTGCCCGCTCTCTTGTCGGC
TGGATATTGAGTTGCAAATT

Product: biotin--protein ligase

Products: NA

Alternate protein names: Biotin operon repressor; Biotin--[acetyl-CoA-carboxylase] synthetase; Biotin--protein ligase [H]

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MSDNWVRKREILGLLSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGRGYKLANPISLIDSARLIQSIDNR
CFYFDEIPSTNGFMLSHTGELKSGDLCVAEYQSAGRGRRGRTWVSPYGHHLYFSQFWSFPQGMAQAMGLSLVVACSLVEV
LKSFGVDNIGVKWPNDIYLNYKKLAGILIEMSGQADSECQLIIGIGVNMAMSEDQGKGIDQPWSDLSALATMPNKTDLVI
ALQKQLKKDIQLFEREGLAAFKLRWQAADLFYGKEIRLLMGENHVEGICRGVDEQGAVLLETADGTQAYIGGEISLRPR

Sequences:

>Translated_319_residues
MSDNWVRKREILGLLSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGRGYKLANPISLIDSARLIQSIDNR
CFYFDEIPSTNGFMLSHTGELKSGDLCVAEYQSAGRGRRGRTWVSPYGHHLYFSQFWSFPQGMAQAMGLSLVVACSLVEV
LKSFGVDNIGVKWPNDIYLNYKKLAGILIEMSGQADSECQLIIGIGVNMAMSEDQGKGIDQPWSDLSALATMPNKTDLVI
ALQKQLKKDIQLFEREGLAAFKLRWQAADLFYGKEIRLLMGENHVEGICRGVDEQGAVLLETADGTQAYIGGEISLRPR
>Mature_318_residues
SDNWVRKREILGLLSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGRGYKLANPISLIDSARLIQSIDNRC
FYFDEIPSTNGFMLSHTGELKSGDLCVAEYQSAGRGRRGRTWVSPYGHHLYFSQFWSFPQGMAQAMGLSLVVACSLVEVL
KSFGVDNIGVKWPNDIYLNYKKLAGILIEMSGQADSECQLIIGIGVNMAMSEDQGKGIDQPWSDLSALATMPNKTDLVIA
LQKQLKKDIQLFEREGLAAFKLRWQAADLFYGKEIRLLMGENHVEGICRGVDEQGAVLLETADGTQAYIGGEISLRPR

Specific function: BirA acts both as a biotin-operon repressor and as the enzyme that synthesizes the corepressor, acetyl-CoA:carbon-dioxide ligase. This protein also activates biotin to form biotinyl-5'- adenylate and transfers the biotin moiety to biotin-accepting protein

COG id: COG0340

COG function: function code H; Biotin-(acetyl-CoA carboxylase) ligase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the biotin--protein ligase family [H]

Homologues:

Organism=Escherichia coli, GI1790408, Length=318, Percent_Identity=44.3396226415094, Blast_Score=292, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004408
- InterPro:   IPR004409
- InterPro:   IPR003142
- InterPro:   IPR004143
- InterPro:   IPR013196
- InterPro:   IPR008988
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02237 BPL_C; PF03099 BPL_LipA_LipB; PF08279 HTH_11 [H]

EC number: =6.3.4.15 [H]

Molecular weight: Translated: 35236; Mature: 35105

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDNWVRKREILGLLSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGRGYK
CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEE
LANPISLIDSARLIQSIDNRCFYFDEIPSTNGFMLSHTGELKSGDLCVAEYQSAGRGRRG
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCCEEEEEHHHCCCCCCC
RTWVSPYGHHLYFSQFWSFPQGMAQAMGLSLVVACSLVEVLKSFGVDNIGVKWPNDIYLN
CEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
YKKLAGILIEMSGQADSECQLIIGIGVNMAMSEDQGKGIDQPWSDLSALATMPNKTDLVI
HHHHCEEEEEECCCCCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEH
ALQKQLKKDIQLFEREGLAAFKLRWQAADLFYGKEIRLLMGENHVEGICRGVDEQGAVLL
HHHHHHHHHHHHHHHCCCEEEEEEEEHHCEEECCEEEEEECCCHHHHHHCCCCCCCCEEE
ETADGTQAYIGGEISLRPR
EECCCCEEEECCEEEECCC
>Mature Secondary Structure 
SDNWVRKREILGLLSSEHFVSGEELATQLGVSRAAVSKHVDALEDYGVAIYSVKGRGYK
CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEE
LANPISLIDSARLIQSIDNRCFYFDEIPSTNGFMLSHTGELKSGDLCVAEYQSAGRGRRG
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCCCCCEEEEEHHHCCCCCCC
RTWVSPYGHHLYFSQFWSFPQGMAQAMGLSLVVACSLVEVLKSFGVDNIGVKWPNDIYLN
CEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
YKKLAGILIEMSGQADSECQLIIGIGVNMAMSEDQGKGIDQPWSDLSALATMPNKTDLVI
HHHHCEEEEEECCCCCCCEEEEEEECCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEH
ALQKQLKKDIQLFEREGLAAFKLRWQAADLFYGKEIRLLMGENHVEGICRGVDEQGAVLL
HHHHHHHHHHHHHHHCCCEEEEEEEEHHCEEECCEEEEEECCCHHHHHHCCCCCCCCEEE
ETADGTQAYIGGEISLRPR
EECCCCEEEECCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3899863; 3536662; 8265357; 9278503; 1311302; 1328157; 1409631; 11353844 [H]