Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
---|---|
Accession | NC_008577 |
Length | 4,972,204 |
Click here to switch to the map view.
The map label for this gene is exeM [H]
Identifier: 117918618
GI number: 117918618
Start: 184314
End: 184790
Strand: Direct
Name: exeM [H]
Synonym: Shewana3_0160
Alternate gene names: 117918618
Gene position: 184314-184790 (Clockwise)
Preceding gene: 117918617
Following gene: 117918619
Centisome position: 3.71
GC content: 50.52
Gene sequence:
>477_bases ATGGATAATTTGCGGACTTGGTGGCAAGGGCTTGCATCGCGCGAGCAGCAAATCGTCGGCTTCGGCGCCGTTTTCTTAGT GATCGGCGTGTTTTACTGGGGCATCTGGACACCCATTGCCAATGCCGAAGCCAATGCACTGCGCAACTTAACGGCGCAGC AGCAGACTCTGACCTATGTAAAGCAAACGGCAAATAAAATCGCTGGCTTAAAACAAAGCGGCGCTAAGCCGACAATGTCA GGCAGCTTAAGCTCGGTCGTTAACCAAACGGCGGGCACTTACGGATTAGTGATCACTCGCATGCAGCCCCAGGGCGATAA AATACAAGTGTGGATGGATGATGTGCCATTCGATGCCTTACTGAATTATTTGAGTGACTTAGTGCAGAAAAAAGGCCTAT CACTTGAGAGTGTTGATTTGGCAGAGGCCGACGCGCCTGGCTATGTCAAAGTAAGACGTATCCAACTAGCGCAATAG
Upstream 100 bases:
>100_bases TTTAAAGAAATAGTCGGCCGTCGCTTCCAAATGGACGGCGGTACGATGAACAGCGGTGAAGATCAGGTCACCAGCACCTT AACCTTGAGGAGCAAATAAG
Downstream 100 bases:
>100_bases GTTAAGGTGTAGCTGTGAGTTTGATAAAAAAAATCATTATAGGTGTACTGGTTTATTTAGTGTTTTTGCTGGCGTTATTT CCCGCCAGTGTCGCTGTGCG
Product: general secretion pathway M protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 158
Protein sequence:
>158_residues MDNLRTWWQGLASREQQIVGFGAVFLVIGVFYWGIWTPIANAEANALRNLTAQQQTLTYVKQTANKIAGLKQSGAKPTMS GSLSSVVNQTAGTYGLVITRMQPQGDKIQVWMDDVPFDALLNYLSDLVQKKGLSLESVDLAEADAPGYVKVRRIQLAQ
Sequences:
>Translated_158_residues MDNLRTWWQGLASREQQIVGFGAVFLVIGVFYWGIWTPIANAEANALRNLTAQQQTLTYVKQTANKIAGLKQSGAKPTMS GSLSSVVNQTAGTYGLVITRMQPQGDKIQVWMDDVPFDALLNYLSDLVQKKGLSLESVDLAEADAPGYVKVRRIQLAQ >Mature_158_residues MDNLRTWWQGLASREQQIVGFGAVFLVIGVFYWGIWTPIANAEANALRNLTAQQQTLTYVKQTANKIAGLKQSGAKPTMS GSLSSVVNQTAGTYGLVITRMQPQGDKIQVWMDDVPFDALLNYLSDLVQKKGLSLESVDLAEADAPGYVKVRRIQLAQ
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3149
COG function: function code U; Type II secretory pathway, component PulM
Gene ontology:
Cell location: Cell inner membrane (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP M family [H]
Homologues:
Organism=Escherichia coli, GI1789339, Length=152, Percent_Identity=29.6052631578947, Blast_Score=72, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007690 - InterPro: IPR023229 [H]
Pfam domain/function: PF04612 GspM [H]
EC number: NA
Molecular weight: Translated: 17375; Mature: 17375
Theoretical pI: Translated: 9.40; Mature: 9.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLRTWWQGLASREQQIVGFGAVFLVIGVFYWGIWTPIANAEANALRNLTAQQQTLTYV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH KQTANKIAGLKQSGAKPTMSGSLSSVVNQTAGTYGLVITRMQPQGDKIQVWMDDVPFDAL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCHHHH LNYLSDLVQKKGLSLESVDLAEADAPGYVKVRRIQLAQ HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MDNLRTWWQGLASREQQIVGFGAVFLVIGVFYWGIWTPIANAEANALRNLTAQQQTLTYV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH KQTANKIAGLKQSGAKPTMSGSLSSVVNQTAGTYGLVITRMQPQGDKIQVWMDDVPFDAL HHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCHHHH LNYLSDLVQKKGLSLESVDLAEADAPGYVKVRRIQLAQ HHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8407845 [H]