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The map label for this gene is exeF [H]

Identifier: 117918611

GI number: 117918611

Start: 178677

End: 179900

Strand: Direct

Name: exeF [H]

Synonym: Shewana3_0153

Alternate gene names: 117918611

Gene position: 178677-179900 (Clockwise)

Preceding gene: 117918610

Following gene: 117918612

Centisome position: 3.59

GC content: 52.53

Gene sequence:

>1224_bases
ATGCCAGCATTTGAATATAAGGCGCTGGACGCCAAGGGAAAACAGCTAAAAGGGGTGATTGAGGCGGATACCGCCAGACA
TGCCCGTAGTCAGCTGCGTGACCAACGCATGATGCCGCTGGAGATTTTGCCAGTCACCGAAAAGGAAGCCAAGTCAAAAG
GCACCGGATTCTCGCCCTTTAAGCGCGGGATTTCGGTGGCGGAATTAGCGTTGATCACCCGTCAAATCGCCACGCTAGTT
GCGGCGGGCTTACCGATTGAGGAGTGTCTCAAGGCGGTGGGGCAGCAATGTGAGAAGGCGCGTCTCGCCAGCATGATCAT
GGCGGTGCGTTCCCGCGTGGTGGAAGGCTATAGTCTGGCCGACTCTCTTGCCGAATTTCCGCATATTTTCGATGACTTGT
ACCGCGCCATGGTGGCCTCGGGTGAAAAATCCGGCCACTTAGAAGTGGTGCTGAACCGCTTAGCCGATTACACCGAGCGC
CGCCAGCAGCTGAAGTCCAAACTGCAACAGGCGATGATTTACCCCATTATGCTGACGATAGTCGCCATTGGGGTGGTATC
AGTGTTATTGGCCGCCGTGGTGCCAAAAGTGGTTGGCCAATTTGAGCATATGGGCGCCGAGTTACCCGCTACAACCCGCT
TCTTAATTGCCGCCTCAGACTTTGTCCAACACTATGGTCTGTTTGTTATCTTGGCTATCGGTATTTTGCTGGTGGTGTTC
CAGCGTCTACTTAAGTCACCGATTTTCAAGATGAAATACCATACGTTTTTGCTAAAAATGCCGGTGATTGGCCGAGTGAG
TAAAGGACTCAATACCGCGCGGTTTGCGCGAACCTTGAGTATTTTATCCGCCAGTTCAGTACCTTTGTTAGATGGGATGC
GCATTGCCAGCGAAGTATTGCAAAATGTGCGGGTGCGAGCGGCGGTGGATGATGCCACGGCGCGCGTACGGGAAGGAACT
AGCCTAGGTGCAGCGTTGACTAACACTAAGCTATTCCCTGCGATGATGTTATATATGATCGCCTCGGGGGAGAAGAGTGG
TCAGCTCGAGGAAATGCTTGAGCGTGCTGCGGATAACCAAGATAGGGAATTTGAGAGTAATGTTACACTGGCGCTGGGTG
TGTTCGAGCCCATGTTGGTGGTGAGCATGGCGGGGGTTGTACTCTTTATCGTGATGGCCATTCTGCAACCTATTTTGGCA
CTGAACAATTTGATTAGTGGCTAG

Upstream 100 bases:

>100_bases
CCAGTCGGTGCCAAGCATTCGCCACGATGGCATGAGCAAGGTGCTCTCAGGTATCACCACTCTAGAAGAAGTCCTGAGGG
TGACCCGCGAGGAGTAAGCT

Downstream 100 bases:

>100_bases
TTTTTAATTTATGGATTATTGCCTCTTTGGACTCAGAGATGGCGCAGGTTTTTCTAGGAGATGTAGTCGATGCAAATGAA
CAAAAAGCACAAGGGTTTTA

Product: general secretion pathway protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVTEKEAKSKGTGFSPFKRGISVAELALITRQIATLV
AAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTER
RQQLKSKLQQAMIYPIMLTIVAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAIGILLVVF
QRLLKSPIFKMKYHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNVRVRAAVDDATARVREGT
SLGAALTNTKLFPAMMLYMIASGEKSGQLEEMLERAADNQDREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILA
LNNLISG

Sequences:

>Translated_407_residues
MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVTEKEAKSKGTGFSPFKRGISVAELALITRQIATLV
AAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTER
RQQLKSKLQQAMIYPIMLTIVAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAIGILLVVF
QRLLKSPIFKMKYHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNVRVRAAVDDATARVREGT
SLGAALTNTKLFPAMMLYMIASGEKSGQLEEMLERAADNQDREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILA
LNNLISG
>Mature_406_residues
PAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVTEKEAKSKGTGFSPFKRGISVAELALITRQIATLVA
AGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLADSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERR
QQLKSKLQQAMIYPIMLTIVAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAIGILLVVFQ
RLLKSPIFKMKYHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVLQNVRVRAAVDDATARVREGTS
LGAALTNTKLFPAMMLYMIASGEKSGQLEEMLERAADNQDREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILAL
NNLISG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=403, Percent_Identity=46.4019851116625, Blast_Score=371, Evalue=1e-104,
Organism=Escherichia coli, GI1786295, Length=405, Percent_Identity=23.9506172839506, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR011850
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44517; Mature: 44386

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVTEKEAKSKGTGFSPF
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCHH
KRGISVAELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLA
HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAIGILLVVF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLLKSPIFKMKYHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVL
HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QNVRVRAAVDDATARVREGTSLGAALTNTKLFPAMMLYMIASGEKSGQLEEMLERAADNQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
DREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLISG
CCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PAFEYKALDAKGKQLKGVIEADTARHARSQLRDQRMMPLEILPVTEKEAKSKGTGFSPF
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCCCCCCHH
KRGISVAELALITRQIATLVAAGLPIEECLKAVGQQCEKARLASMIMAVRSRVVEGYSLA
HHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DSLAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKLQQAMIYPIMLTI
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAIGVVSVLLAAVVPKVVGQFEHMGAELPATTRFLIAASDFVQHYGLFVILAIGILLVVF
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLLKSPIFKMKYHTFLLKMPVIGRVSKGLNTARFARTLSILSASSVPLLDGMRIASEVL
HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QNVRVRAAVDDATARVREGTSLGAALTNTKLFPAMMLYMIASGEKSGQLEEMLERAADNQ
HHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
DREFESNVTLALGVFEPMLVVSMAGVVLFIVMAILQPILALNNLISG
CCHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1640836 [H]