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The map label for this gene is ytrA [H]

Identifier: 117918536

GI number: 117918536

Start: 89769

End: 90134

Strand: Direct

Name: ytrA [H]

Synonym: Shewana3_0077

Alternate gene names: 117918536

Gene position: 89769-90134 (Clockwise)

Preceding gene: 117918531

Following gene: 117918537

Centisome position: 1.81

GC content: 54.1

Gene sequence:

>366_bases
ATGTTAGAACTTTTAAATGTCAACCCCAGCAGTGGTGAGCCAATTTACAAGCAATTACACGAGCAAATCGTGCGCTTGAT
TGTGGGCGGCCAGTTGCAAGAGGAAGACGTATTACCCTCAGTGCGCCAAATTGCTGAATATCTTGCGGTCAATCCGATGA
CGGTGTCCCGCGCGATTCAGCAATTGGTCGATCAGGGTTGGCTAGAACGTCGCCGTGGTCAGGCGACTAGGGTCGCGGCG
CGTACCGAGGCGATGGAGTCGGGCGTGAGTCTGCTCGAGCCGCAATTAGATGCCTTGCTGGCGCAGGCAAAGCAGCTGGG
CGTGAGTCTGCCCGAATTACTGCAATTGATTAATGAGCGTTGGTAG

Upstream 100 bases:

>100_bases
TCTATCATGAGCGCTTTCCTTTTTGCATTTCAGGATGAGTGTGTTACTTTAAATACAGTGTATCGGTGTATCAATGTATT
AATACAGTGTGTAAAGACTA

Downstream 100 bases:

>100_bases
CCTGAGTCGAGCTAAGCGAAAACGAGAATAAAAAGGACGCAATTCGATGGACCAAGACTGTACCCCAATACTAGAGTTTT
CTAACGTAAACAAAGTGTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MLELLNVNPSSGEPIYKQLHEQIVRLIVGGQLQEEDVLPSVRQIAEYLAVNPMTVSRAIQQLVDQGWLERRRGQATRVAA
RTEAMESGVSLLEPQLDALLAQAKQLGVSLPELLQLINERW

Sequences:

>Translated_121_residues
MLELLNVNPSSGEPIYKQLHEQIVRLIVGGQLQEEDVLPSVRQIAEYLAVNPMTVSRAIQQLVDQGWLERRRGQATRVAA
RTEAMESGVSLLEPQLDALLAQAKQLGVSLPELLQLINERW
>Mature_121_residues
MLELLNVNPSSGEPIYKQLHEQIVRLIVGGQLQEEDVLPSVRQIAEYLAVNPMTVSRAIQQLVDQGWLERRRGQATRVAA
RTEAMESGVSLLEPQLDALLAQAKQLGVSLPELLQLINERW

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 13565; Mature: 13565

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELLNVNPSSGEPIYKQLHEQIVRLIVGGQLQEEDVLPSVRQIAEYLAVNPMTVSRAIQ
CCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
QLVDQGWLERRRGQATRVAARTEAMESGVSLLEPQLDALLAQAKQLGVSLPELLQLINER
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
W
C
>Mature Secondary Structure
MLELLNVNPSSGEPIYKQLHEQIVRLIVGGQLQEEDVLPSVRQIAEYLAVNPMTVSRAIQ
CCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
QLVDQGWLERRRGQATRVAARTEAMESGVSLLEPQLDALLAQAKQLGVSLPELLQLINER
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
W
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]