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The map label for this gene is glxA [H]

Identifier: 117918531

GI number: 117918531

Start: 84734

End: 85777

Strand: Direct

Name: glxA [H]

Synonym: Shewana3_0072

Alternate gene names: 117918531

Gene position: 84734-85777 (Clockwise)

Preceding gene: 117918529

Following gene: 117918536

Centisome position: 1.7

GC content: 48.95

Gene sequence:

>1044_bases
ATGAAAAGGATCACTATTTTGGCGACGGACAATACGGTTGCCAGCGGGATTATTGGTTTTCTCGATGTGTTTAGTTTCTG
CAATACCTATTGGCGGCGAGTCAATCCACAGGCCGAACAAGACCTGTTTGAGTGCCAAGTGGTCTCGAGTCATGGCGGTG
ATATCCTAACGAATCAAGGTATTAAAGTGCCTGCCGTTGGGCTTAATACCCCGAATGATATTCTGCACTCCGATGCGGTG
ATTTTGGCTTCGGCCATGGTGACCAATAAAAGCGAGTTTCAAAACTATCTTCATGATTTTGAATCCTTATTCGAACCGTT
AAGGCTGTTTGCCGACTCAGGTAAACCATTGGCGGCCTATTGCTCTGGCACCTTGATTTTAGCGGCCTCCGGCCTGCTGG
ACGGGCGTGAAGCGACCACCGTCTGGTGGCTGAATGAGATGTTTCAGCGACATTTTGCCAAGGTGAACCTGCGGATGGAC
AAGCTGGTGGTGTCCGACGGCCATCTGCATACCGCGGGGGCGACAACCTCGAATATGAGCCTCGCCCTGCATTTAGTGCA
CATTTTGGTGGGTGAGCAGTTAGCAAGCCAGATGGCAAAAATCCTGTTGATTGATCCTAATCGCCAATCCCAACAACCCT
TTATGACCATGGATCTGATGACGTCAAGCCATAAGGACGAGGTGATTTGGAATGTGCAGCAATGGATGCAGCATCATTTA
ACCGAACCGCTGTTACTAGATGATATTGCTGATAAATTTGCTTTAGGTAAGCGCACCCTTATTCGCCGCTTTAAAAAGGC
ATTAAACGAGACTCCGGCCAGCTATGTGCAGCGTCTGCGGGTGGATGAGGCAAAACGCCTATTGGAAACGACCAGTTTAG
GCTTAGAGGAAGTGGTCACCCGTGTGGGTTATGAGGATGTCAGCTCGTTTCGCAAATTATTCATTCAGCTAACGAGCTTA
ACCCCGAGGGCCTACAGGCAGCGCTTTAATACTCAGCAATATGAGTTTGATAGCGACAACTGCTGCGAGGCTGAACTGCA
TTAA

Upstream 100 bases:

>100_bases
TGGGCTTGAAGTGTCGTTATTGACAATTTTAGGGTGAGTAGTGACATTTTTAGCCAGTAAGCTAGACTCAATGCATGATG
AGGCTGGCGAGGGCATTGGG

Downstream 100 bases:

>100_bases
TGGCTATTTCAGCGCGTCAATCTGTTGCGCCAGAGATGTCTTGGCAGTGTCGTTCTCTGCGTCTGTCACTATGCGCTCCA
GTACTTGCACACGCTCGGTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 347

Protein sequence:

>347_residues
MKRITILATDNTVASGIIGFLDVFSFCNTYWRRVNPQAEQDLFECQVVSSHGGDILTNQGIKVPAVGLNTPNDILHSDAV
ILASAMVTNKSEFQNYLHDFESLFEPLRLFADSGKPLAAYCSGTLILAASGLLDGREATTVWWLNEMFQRHFAKVNLRMD
KLVVSDGHLHTAGATTSNMSLALHLVHILVGEQLASQMAKILLIDPNRQSQQPFMTMDLMTSSHKDEVIWNVQQWMQHHL
TEPLLLDDIADKFALGKRTLIRRFKKALNETPASYVQRLRVDEAKRLLETTSLGLEEVVTRVGYEDVSSFRKLFIQLTSL
TPRAYRQRFNTQQYEFDSDNCCEAELH

Sequences:

>Translated_347_residues
MKRITILATDNTVASGIIGFLDVFSFCNTYWRRVNPQAEQDLFECQVVSSHGGDILTNQGIKVPAVGLNTPNDILHSDAV
ILASAMVTNKSEFQNYLHDFESLFEPLRLFADSGKPLAAYCSGTLILAASGLLDGREATTVWWLNEMFQRHFAKVNLRMD
KLVVSDGHLHTAGATTSNMSLALHLVHILVGEQLASQMAKILLIDPNRQSQQPFMTMDLMTSSHKDEVIWNVQQWMQHHL
TEPLLLDDIADKFALGKRTLIRRFKKALNETPASYVQRLRVDEAKRLLETTSLGLEEVVTRVGYEDVSSFRKLFIQLTSL
TPRAYRQRFNTQQYEFDSDNCCEAELH
>Mature_347_residues
MKRITILATDNTVASGIIGFLDVFSFCNTYWRRVNPQAEQDLFECQVVSSHGGDILTNQGIKVPAVGLNTPNDILHSDAV
ILASAMVTNKSEFQNYLHDFESLFEPLRLFADSGKPLAAYCSGTLILAASGLLDGREATTVWWLNEMFQRHFAKVNLRMD
KLVVSDGHLHTAGATTSNMSLALHLVHILVGEQLASQMAKILLIDPNRQSQQPFMTMDLMTSSHKDEVIWNVQQWMQHHL
TEPLLLDDIADKFALGKRTLIRRFKKALNETPASYVQRLRVDEAKRLLETTSLGLEEVVTRVGYEDVSSFRKLFIQLTSL
TPRAYRQRFNTQQYEFDSDNCCEAELH

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=93, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787987, Length=105, Percent_Identity=32.3809523809524, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39277; Mature: 39277

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRITILATDNTVASGIIGFLDVFSFCNTYWRRVNPQAEQDLFECQVVSSHGGDILTNQG
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCEEECCC
IKVPAVGLNTPNDILHSDAVILASAMVTNKSEFQNYLHDFESLFEPLRLFADSGKPLAAY
CEECEECCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHH
CSGTLILAASGLLDGREATTVWWLNEMFQRHFAKVNLRMDKLVVSDGHLHTAGATTSNMS
HCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCEEECCCCCCHHH
LALHLVHILVGEQLASQMAKILLIDPNRQSQQPFMTMDLMTSSHKDEVIWNVQQWMQHHL
HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHC
TEPLLLDDIADKFALGKRTLIRRFKKALNETPASYVQRLRVDEAKRLLETTSLGLEEVVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RVGYEDVSSFRKLFIQLTSLTPRAYRQRFNTQQYEFDSDNCCEAELH
HHCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRITILATDNTVASGIIGFLDVFSFCNTYWRRVNPQAEQDLFECQVVSSHGGDILTNQG
CCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCCCEEECCC
IKVPAVGLNTPNDILHSDAVILASAMVTNKSEFQNYLHDFESLFEPLRLFADSGKPLAAY
CEECEECCCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHH
CSGTLILAASGLLDGREATTVWWLNEMFQRHFAKVNLRMDKLVVSDGHLHTAGATTSNMS
HCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHEEEECCCEEECCCCCCHHH
LALHLVHILVGEQLASQMAKILLIDPNRQSQQPFMTMDLMTSSHKDEVIWNVQQWMQHHL
HHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHC
TEPLLLDDIADKFALGKRTLIRRFKKALNETPASYVQRLRVDEAKRLLETTSLGLEEVVT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RVGYEDVSSFRKLFIQLTSLTPRAYRQRFNTQQYEFDSDNCCEAELH
HHCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]