Click here to switch to the map view.

The map label for this gene is gpsA [H]

Identifier: 117918513

GI number: 117918513

Start: 63221

End: 64237

Strand: Direct

Name: gpsA [H]

Synonym: Shewana3_0054

Alternate gene names: 117918513

Gene position: 63221-64237 (Clockwise)

Preceding gene: 117918512

Following gene: 117918514

Centisome position: 1.27

GC content: 51.72

Gene sequence:

>1017_bases
ATGAAAAACTCTGCCGATATCACTGTGTTAGGGGCGGGCTCTTATGGCACCGCCCTTGCCATCTCTCTAGCCAGCAATGG
TCATAAGACCTTGTTGTGGGGGCACGATCCTGCCCATATGCAAACGCTCGCTCAGGACAAATGCAACCAAGCTTTCTTGC
CTGGTATTGCCTTCCCCGAGTGTTTACATATCGAAGCCGACTTAGCCAAAGCCTTAGCGGCCAGCAATAATGTGCTGGTT
GTGGTACCTAGCCATGTATTTGGCTCGGTACTGGCCCAAGCGAAACCTTTGTTACGCCAAGATGCTCGCATCGTATGGGC
GACCAAAGGACTCGAGCCTGAAACCGGACGTTTGCTGCAAGATGTGGCCCGTGATGTGTTAGGCGAGCAATATCCGCTGG
CGGTATTGTCAGGACCGACGTTCGCGAAGGAATTAGCTATGGGGTTACCTACGGCGATTTCGGTTGCGGGTACTTGTCCC
AAATTTACCGCTGAGCTAGTGGAATTGCTGCACAGCCCTAAACGTTTACGCGTTTATGCTAACGACGACTTTATCGGCCT
GCAATTAGGCGGCGCGGTGAAGAACGTTATCGCCATTGGTGCGGGCATGTCAGACGGTATTGGCTTTGGTGCTAATGCCA
GAACGGCGTTAATTACCCGTGGTTTAGTCGAGTTAACCCGCTTAGGCGAAGCCTTAGGTGCAAGTACCGCTACCTTTATG
GGCATGGCTGGATTAGGCGACCTAGTGTTAACTTGTACCGACAACCAATCCCGTAACCGCCGCTTTGGTTTAGCCTTAGG
TAAAGGTTGCGATGTGGATACCGCCCAGGCCGAAATCGGCCAAGTGGTTGAAGGTTATCGCAATACTAAAGAAGTGTTTA
CTCTAGCGAAGCGCATGGGCGTCGAAATGCCGATCACCGAGCAAATCTACCAAGTGTTATACCAAGGCAAAGCGCCCTTG
GATGCCGCCAAAGAACTGCTCAGCAGAGAAAAGAAATCAGAAACGCCAGCGCAATAA

Upstream 100 bases:

>100_bases
TTAGCACCAGTAAACTTCGACGCTCTGTTCGCACAATACGTGCAACAACGTCAAGCCGCAGCAGCTGCACCAGCAGCCGA
AGAAGCTAACGCTTAATTAC

Downstream 100 bases:

>100_bases
AGCGCGAGTCGTGATGATGCTGAATAAAATAAAGGGTGCTAAAATAGCGCCCTTTTTTATGTCCGATCGCTATCGCCTTA
ATGTACAGGCAGCAGTCTGC

Product: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase

Products: NA

Alternate protein names: NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKNSADITVLGAGSYGTALAISLASNGHKTLLWGHDPAHMQTLAQDKCNQAFLPGIAFPECLHIEADLAKALAASNNVLV
VVPSHVFGSVLAQAKPLLRQDARIVWATKGLEPETGRLLQDVARDVLGEQYPLAVLSGPTFAKELAMGLPTAISVAGTCP
KFTAELVELLHSPKRLRVYANDDFIGLQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVELTRLGEALGASTATFM
GMAGLGDLVLTCTDNQSRNRRFGLALGKGCDVDTAQAEIGQVVEGYRNTKEVFTLAKRMGVEMPITEQIYQVLYQGKAPL
DAAKELLSREKKSETPAQ

Sequences:

>Translated_338_residues
MKNSADITVLGAGSYGTALAISLASNGHKTLLWGHDPAHMQTLAQDKCNQAFLPGIAFPECLHIEADLAKALAASNNVLV
VVPSHVFGSVLAQAKPLLRQDARIVWATKGLEPETGRLLQDVARDVLGEQYPLAVLSGPTFAKELAMGLPTAISVAGTCP
KFTAELVELLHSPKRLRVYANDDFIGLQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVELTRLGEALGASTATFM
GMAGLGDLVLTCTDNQSRNRRFGLALGKGCDVDTAQAEIGQVVEGYRNTKEVFTLAKRMGVEMPITEQIYQVLYQGKAPL
DAAKELLSREKKSETPAQ
>Mature_338_residues
MKNSADITVLGAGSYGTALAISLASNGHKTLLWGHDPAHMQTLAQDKCNQAFLPGIAFPECLHIEADLAKALAASNNVLV
VVPSHVFGSVLAQAKPLLRQDARIVWATKGLEPETGRLLQDVARDVLGEQYPLAVLSGPTFAKELAMGLPTAISVAGTCP
KFTAELVELLHSPKRLRVYANDDFIGLQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVELTRLGEALGASTATFM
GMAGLGDLVLTCTDNQSRNRRFGLALGKGCDVDTAQAEIGQVVEGYRNTKEVFTLAKRMGVEMPITEQIYQVLYQGKAPL
DAAKELLSREKKSETPAQ

Specific function: De novo phospholipid biosynthesis; glycerol-3 phosphate formation. [C]

COG id: COG0240

COG function: function code C; Glycerol-3-phosphate dehydrogenase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI33695088, Length=338, Percent_Identity=27.2189349112426, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI24307999, Length=344, Percent_Identity=26.1627906976744, Blast_Score=117, Evalue=1e-26,
Organism=Escherichia coli, GI1790037, Length=333, Percent_Identity=73.5735735735736, Blast_Score=501, Evalue=1e-143,
Organism=Caenorhabditis elegans, GI17507425, Length=340, Percent_Identity=25, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI32564399, Length=330, Percent_Identity=24.5454545454545, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI193210136, Length=339, Percent_Identity=24.188790560472, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564403, Length=339, Percent_Identity=24.188790560472, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI193210134, Length=203, Percent_Identity=27.0935960591133, Blast_Score=74, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6320181, Length=341, Percent_Identity=27.5659824046921, Blast_Score=101, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6324513, Length=344, Percent_Identity=26.1627906976744, Blast_Score=100, Evalue=5e-22,
Organism=Drosophila melanogaster, GI17136202, Length=343, Percent_Identity=25.0728862973761, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI17136200, Length=343, Percent_Identity=25.0728862973761, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI17136204, Length=343, Percent_Identity=25.0728862973761, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI22026922, Length=350, Percent_Identity=22, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45551945, Length=265, Percent_Identity=25.2830188679245, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281362270, Length=265, Percent_Identity=25.2830188679245, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008927
- InterPro:   IPR013328
- InterPro:   IPR006168
- InterPro:   IPR006109
- InterPro:   IPR011128
- InterPro:   IPR016040 [H]

Pfam domain/function: PF07479 NAD_Gly3P_dh_C; PF01210 NAD_Gly3P_dh_N [H]

EC number: =1.1.1.94 [H]

Molecular weight: Translated: 35766; Mature: 35766

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS00957 NAD_G3PDH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSADITVLGAGSYGTALAISLASNGHKTLLWGHDPAHMQTLAQDKCNQAFLPGIAFPE
CCCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCH
CLHIEADLAKALAASNNVLVVVPSHVFGSVLAQAKPLLRQDARIVWATKGLEPETGRLLQ
HEEHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
DVARDVLGEQYPLAVLSGPTFAKELAMGLPTAISVAGTCPKFTAELVELLHSPKRLRVYA
HHHHHHCCCCCCEEEECCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE
NDDFIGLQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVELTRLGEALGASTATFM
CCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
GMAGLGDLVLTCTDNQSRNRRFGLALGKGCDVDTAQAEIGQVVEGYRNTKEVFTLAKRMG
HHCCCCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHC
VEMPITEQIYQVLYQGKAPLDAAKELLSREKKSETPAQ
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKNSADITVLGAGSYGTALAISLASNGHKTLLWGHDPAHMQTLAQDKCNQAFLPGIAFPE
CCCCCCEEEEECCCCCCEEEEEEECCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCH
CLHIEADLAKALAASNNVLVVVPSHVFGSVLAQAKPLLRQDARIVWATKGLEPETGRLLQ
HEEHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHH
DVARDVLGEQYPLAVLSGPTFAKELAMGLPTAISVAGTCPKFTAELVELLHSPKRLRVYA
HHHHHHCCCCCCEEEECCCHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEEE
NDDFIGLQLGGAVKNVIAIGAGMSDGIGFGANARTALITRGLVELTRLGEALGASTATFM
CCCEEEEEECHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
GMAGLGDLVLTCTDNQSRNRRFGLALGKGCDVDTAQAEIGQVVEGYRNTKEVFTLAKRMG
HHCCCCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHC
VEMPITEQIYQVLYQGKAPLDAAKELLSREKKSETPAQ
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA