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The map label for this gene is ydcM [C]

Identifier: 117621822

GI number: 117621822

Start: 20905

End: 22041

Strand: Direct

Name: ydcM [C]

Synonym: BAPKO_4522

Alternate gene names: 117621822

Gene position: 20905-22041 (Clockwise)

Preceding gene: 117621820

Following gene: 117621825

Centisome position: 73.27

GC content: 26.82

Gene sequence:

>1137_bases
ATGAGTGCTAATAAAGCTTATAAGTATAGAATATATCCCAACGTTAATCAAAAGAAATATTTTTCAAAAGCATTTGGATG
TGTAAGATTTTTGTATAACAAAATGTTAAGTGATAAGAAAGACTATTATGAAAAGAATAAGAAAAGTCTTAGTGTTAATC
CAAGTAATTATAAAAATGAATTTCCATTTCTAAAGGAAGTAGTTGATAGTTTAGCTCTTTGTAGCGCATGGATTGACTTA
AATTCTGCGTATAGTAATTTTTTTAGAGAAATTAAAAAAGGAAATAGAACGCAAGGATTTCCTAAATATAAAAGTAAAAA
AAATAGACAAACCTATAGAACTAATAATCAAAAAAACTCTATAAGAATAGAAAATGATTATATAAAGATGCCTAAAATAG
GATTTGTAAAATTGGCGTTACATAGAAATATTAAGAGCAATGAAGTTATTAAAAATGTAGTAGTAGAAAAAGATATTGAT
GATAAATATTATATTTCAGCAGCAGTTGAGTGCTTAGATGTTAAAAATAATGATAAAACTAAAGACAATAAAAAAGAGGT
AGTTGGTATTGATATGAGCATGAGGCACTTTTTAGTAAGTAGCGAGGGTGAGAAAATCAATCATCCTAAATATTTACTAA
AAAATGAAAGTAAACTTAAGAAATATCAAAGAAAACTATCAAAAAAACAAAAGGGTTCTAGAAATAGGGCTAAATCTAGA
TTAAGAGTTGCCAAGTTGCATAGGAAAATTTCAAATCAAAGAAAAGATTTTTTACATAAATTATCTTATTATTTTGTAGC
TAATTACAAAAATATAGCAATAGAAAACTTATCAATTAAAGGTATGCAAAAAGGAATGTTTGGCAAAAGTGTTAATGATT
TAGGATGGCATGAGTTTGTAAGACAATTATCATATAAATCAGAGTGGTATGGATCCTATTTACATAAAGTTGATAGATAT
TTTCCATCAAGCAAGCTATGCAACAATTGCCACATTAAAAATACAACTCTGAAATTAAGTGATACTAGGTGGACTTGTAG
GAGTTGTAACACTTTGCATGATAGAGATATAAATGCAGCTCTAAATCTTAAAGCTTATTATTATAAGGAAATAAAAACTA
AGGCAGGAACTGCCTGA

Upstream 100 bases:

>100_bases
AGTAATCACAAAGAATACTCCACCTATAATTTCTATGAAATTTAGGTGGAGATGAATTTGTAACGTAAGTTAAAATATAT
AATATAATAATTTAAAAATA

Downstream 100 bases:

>100_bases
AGTAAAGCTTGTGGACCATGCTCTAGTGGATGACCGTTCTTGTAGAACCTAAAAAGCTATCATGGGATGAAACAAGAAGC
TATTTCTATAATCTTTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSANKAYKYRIYPNVNQKKYFSKAFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVVDSLALCSAWIDL
NSAYSNFFREIKKGNRTQGFPKYKSKKNRQTYRTNNQKNSIRIENDYIKMPKIGFVKLALHRNIKSNEVIKNVVVEKDID
DKYYISAAVECLDVKNNDKTKDNKKEVVGIDMSMRHFLVSSEGEKINHPKYLLKNESKLKKYQRKLSKKQKGSRNRAKSR
LRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFVRQLSYKSEWYGSYLHKVDRY
FPSSKLCNNCHIKNTTLKLSDTRWTCRSCNTLHDRDINAALNLKAYYYKEIKTKAGTA

Sequences:

>Translated_378_residues
MSANKAYKYRIYPNVNQKKYFSKAFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVVDSLALCSAWIDL
NSAYSNFFREIKKGNRTQGFPKYKSKKNRQTYRTNNQKNSIRIENDYIKMPKIGFVKLALHRNIKSNEVIKNVVVEKDID
DKYYISAAVECLDVKNNDKTKDNKKEVVGIDMSMRHFLVSSEGEKINHPKYLLKNESKLKKYQRKLSKKQKGSRNRAKSR
LRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFVRQLSYKSEWYGSYLHKVDRY
FPSSKLCNNCHIKNTTLKLSDTRWTCRSCNTLHDRDINAALNLKAYYYKEIKTKAGTA
>Mature_377_residues
SANKAYKYRIYPNVNQKKYFSKAFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVVDSLALCSAWIDLN
SAYSNFFREIKKGNRTQGFPKYKSKKNRQTYRTNNQKNSIRIENDYIKMPKIGFVKLALHRNIKSNEVIKNVVVEKDIDD
KYYISAAVECLDVKNNDKTKDNKKEVVGIDMSMRHFLVSSEGEKINHPKYLLKNESKLKKYQRKLSKKQKGSRNRAKSRL
RVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFVRQLSYKSEWYGSYLHKVDRYF
PSSKLCNNCHIKNTTLKLSDTRWTCRSCNTLHDRDINAALNLKAYYYKEIKTKAGTA

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=363, Percent_Identity=28.6501377410468, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44584; Mature: 44453

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANKAYKYRIYPNVNQKKYFSKAFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNE
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCCC
FPFLKEVVDSLALCSAWIDLNSAYSNFFREIKKGNRTQGFPKYKSKKNRQTYRTNNQKNS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHCCCCCCC
IRIENDYIKMPKIGFVKLALHRNIKSNEVIKNVVVEKDIDDKYYISAAVECLDVKNNDKT
EEEECCEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
KDNKKEVVGIDMSMRHFLVSSEGEKINHPKYLLKNESKLKKYQRKLSKKQKGSRNRAKSR
CCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
LRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFV
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCHHHHHCCCCCCCCCCCCHHHHH
RQLSYKSEWYGSYLHKVDRYFPSSKLCNNCHIKNTTLKLSDTRWTCRSCNTLHDRDINAA
HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEECCEEEEECCCEEHHCCCCCCCCCCCCE
LNLKAYYYKEIKTKAGTA
EEHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SANKAYKYRIYPNVNQKKYFSKAFGCVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNE
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEECCCCCCCCC
FPFLKEVVDSLALCSAWIDLNSAYSNFFREIKKGNRTQGFPKYKSKKNRQTYRTNNQKNS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCHHHHCCCCCCC
IRIENDYIKMPKIGFVKLALHRNIKSNEVIKNVVVEKDIDDKYYISAAVECLDVKNNDKT
EEEECCEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCC
KDNKKEVVGIDMSMRHFLVSSEGEKINHPKYLLKNESKLKKYQRKLSKKQKGSRNRAKSR
CCCCCEEEECCHHHHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH
LRVAKLHRKISNQRKDFLHKLSYYFVANYKNIAIENLSIKGMQKGMFGKSVNDLGWHEFV
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCHHHHHCCCCCCCCCCCCHHHHH
RQLSYKSEWYGSYLHKVDRYFPSSKLCNNCHIKNTTLKLSDTRWTCRSCNTLHDRDINAA
HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEECCEEEEECCCEEHHCCCCCCCCCCCCE
LNLKAYYYKEIKTKAGTA
EEHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]