Definition | Borrelia afzelii PKo plasmid lp28, complete sequence. |
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Accession | NC_008568 |
Length | 28,533 |
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The map label for this gene is 117621806
Identifier: 117621806
GI number: 117621806
Start: 7231
End: 7809
Strand: Reverse
Name: 117621806
Synonym: BAPKO_4506
Alternate gene names: NA
Gene position: 7809-7231 (Counterclockwise)
Preceding gene: 117621810
Following gene: 117621803
Centisome position: 27.37
GC content: 25.39
Gene sequence:
>579_bases ATGAATGCAAAATTTATTGTAAAATGTTTTATTTCGGTATTTTTTTTAATTTCTTGTCAAACTTATCAAATAGCTTATGA TAGGTTTTCTCAAGTATTAGATTCTCAATATGATATTGGGGTAAATTATTCTAGAGATGGAATATTTAGGTCTGTAATTT CGATTAAATATGATAAGTCAAAAAATAAAAAAGAATATTTTATTTTGGTTAAAGTTGAGACTAGAAATTCTAATCAAATA AAGATTGAAAAGATAATCACAGATACTAGGTTTGAGTCTAAAGGGGAGCTGGTTTTAGAAAATAGTAAACGCGTTGTTTA TTATAACGATTTTTATGATTCATATTTTCCTTATGATTCTACAACGGTGATTACTGAAAAAAATATTAAGGTAGAAATTT ATAAATTTATTATTCCAGAAAGCGAGTTTATAAGATTTGTTGCTTTGGGTAATGATAATATAGCGGCATTTAGAATTTAT GCGTTTAGGAATGATGTTATTGTGAATTTTAATAAGATTCCTTTCAAAGAATTTTTGGATGATTTTAACTCAAAAGTTAA ACAACTTGGTGGAAGTTGA
Upstream 100 bases:
>100_bases AAATTAGAATGTTTTTATTTAAATGTATTATATTATTTAATTTTCTGATTTCGAGAAATTTTTTAAAAATAAATATAAGA TAAAATAAAGGGAGATTTTA
Downstream 100 bases:
>100_bases TTTGAGTTTGAATAATTTTTAAGCTTAAGCTAAATGATTATTACTAGGAAGGAGATATATTAAGAATATTTAGTATAAAC AAGTTTTTTTAATATTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 192
Protein sequence:
>192_residues MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKSKNKKEYFILVKVETRNSNQI KIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDSTTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIY AFRNDVIVNFNKIPFKEFLDDFNSKVKQLGGS
Sequences:
>Translated_192_residues MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKSKNKKEYFILVKVETRNSNQI KIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDSTTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIY AFRNDVIVNFNKIPFKEFLDDFNSKVKQLGGS >Mature_192_residues MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKSKNKKEYFILVKVETRNSNQI KIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDSTTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIY AFRNDVIVNFNKIPFKEFLDDFNSKVKQLGGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22652; Mature: 22652
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKS CCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCEECCCHHHEEHEEEEECCC KNKKEYFILVKVETRNSNQIKIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDS CCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCCC TTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIYAFRNDVIVNFNKIPFKEFLD EEEEEECCCEEEEEEEECCCHHHEEEEEECCCCEEEEEEEEEECCEEEEECCCCHHHHHH DFNSKVKQLGGS HHHHHHHHHCCC >Mature Secondary Structure MNAKFIVKCFISVFFLISCQTYQIAYDRFSQVLDSQYDIGVNYSRDGIFRSVISIKYDKS CCCHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCCEECCCHHHEEHEEEEECCC KNKKEYFILVKVETRNSNQIKIEKIITDTRFESKGELVLENSKRVVYYNDFYDSYFPYDS CCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCEEEECCCEEEEEECCCCCCCCCCC TTVITEKNIKVEIYKFIIPESEFIRFVALGNDNIAAFRIYAFRNDVIVNFNKIPFKEFLD EEEEEECCCEEEEEEEECCCHHHEEEEEECCCCEEEEEEEEEECCEEEEECCCCHHHHHH DFNSKVKQLGGS HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8932323; 9403685 [H]