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The map label for this gene is yvoA [H]

Identifier: 116872358

GI number: 116872358

Start: 966045

End: 966767

Strand: Direct

Name: yvoA [H]

Synonym: lwe0940

Alternate gene names: 116872358

Gene position: 966045-966767 (Clockwise)

Preceding gene: 116872357

Following gene: 116872359

Centisome position: 34.33

GC content: 38.59

Gene sequence:

>723_bases
ATGATCGATAAACAATCAGGAATACCGATTTACATTCAGATTCAAAGTGAAATTAAAAAGAAAATGGAAGATGGCGTCTG
GAAAGTTGGGACATCTATTCCGGCTGAACGTCAACTTGCTGAAATGTTTCATGTTAGCCGAATGACTGTAAGACAAGCTA
TTCAAGGGCTAGTGGATGATAATATTTTACAAAGACGAGTTGGTGCTGGAACTTTTATTGCGGAAAAGAAATTAACGGAA
CGATTAGAAGCGGTTACGAGTTTTACGAATTTGATGTTACAAGAAGGAAAAGTCCCTTCGACGCGAATCGTATCATATGG
TATTCGTCCGGCAAGTACGCAAGAACAAGAAGCACTCCAACTACCTGAAAATAGCAATGTGATGAAGATAGAACGGATTC
GTTACGGCGACCGTGTTCCAATTCTTTATGAAGTTGCTGCCATTCCAGAAAAAATTGCTTCACTGCTAACAAAGGAAGAC
ATCATGGATTCCCTTTATAAAGCGATTGAATTAAAACTTGGTCAACCAATTGGAGAAGCAGAGCAAATCATGGAAGCTTC
TTTAGTATCGGAAAAAATTGCGCCATATCTAGATGTGAAACTCGGATCACCAGTTATGAAACTCAGGCAGATTACAACAT
TAGAAGACGGTCGACCATTTGAATTTACGCGTTCCCAATATGTAGGTAGTAGATTTCAATTTGTAGCTAGGATTAAACAA
TAA

Upstream 100 bases:

>100_bases
AGATGTGAATTGTCCTGCTTCTGTTCTTCAAAATCATCCAGATGTTACTGTGATTCTTGACAACGAGGCGGCGTCACTTC
TATAAGAAGAGGGCGGGGAA

Downstream 100 bases:

>100_bases
ATAAAAAGCTTGAGGCGGGTTCTATGCTTCAAGCTTTTTCTTAATGGTTTTCATTGTCTTTTTGCTAATAAAAAAGTATA
ATGGGATGAGTAAAAAGTTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTE
RLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ

Sequences:

>Translated_240_residues
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTE
RLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ
>Mature_240_residues
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTE
RLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=27.7533039647577, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI87082252, Length=220, Percent_Identity=25.4545454545455, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790118, Length=214, Percent_Identity=24.2990654205607, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1788418, Length=229, Percent_Identity=25.764192139738, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790540, Length=121, Percent_Identity=33.8842975206612, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27159; Mature: 27159

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDD
CCCCCCCCEEEEEEHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHHC
LPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKEDIMDSLYKAIELKLGQPIGEA
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ
HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFHVSRMTVRQAIQGLVDD
CCCCCCCCEEEEEEHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTRIVSYGIRPASTQEQEALQ
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEECCCCCCCCHHHHHC
LPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKEDIMDSLYKAIELKLGQPIGEA
CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
EQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGRPFEFTRSQYVGSRFQFVARIKQ
HHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]