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The map label for this gene is ybiA [H]

Identifier: 116872301

GI number: 116872301

Start: 914335

End: 914775

Strand: Direct

Name: ybiA [H]

Synonym: lwe0883

Alternate gene names: 116872301

Gene position: 914335-914775 (Clockwise)

Preceding gene: 116872300

Following gene: 116872302

Centisome position: 32.49

GC content: 35.37

Gene sequence:

>441_bases
ATGAAGGTTATCCATTTTTATAGTGAAAATGCAGACTATGGCTGTTTCTCTAATTTCTCTTTACATCCAGTTGTTATAGA
TGGCGTGACTTACCTAACGACAGAACACTACTTCCAAGCCCAAAAATTTATGGATAAAAAGATTATTAAAAAAATAATTA
GCGCAAAAAAACCAATAGAAGCGGCAAAATTGGGGAGAAATAGAGACTTCCCATTACGAAAAGGCTGGGAAAGCATGAAA
GATGAAGTGATGTTAAAAGCAATAAGAGCAAAAGTAGAGCAACATTCGGAAGTGAAAGAAATACTTTTATCCACAGGAAA
TGCAATTTTAGTGGAACATACGGAAAAAGATAATTATTGGGGCGATGGTGGAAATGGCTCTGGAAAGAATCGGTTAGGTA
AGATTTTGATGAAAGTTAGAGACGAATGGAATGCTAGTTAG

Upstream 100 bases:

>100_bases
GGAAAATAGCGATGGATTTGCGACTATATGTATGCTAAAGTTATTTTGAAAGATAAGCTCAAGTTGCAATAAACATAACG
TAAATACTCGGAGGTGCAAA

Downstream 100 bases:

>100_bases
AGGAGGTAGCTTAAATCGAACCAATAAATCATTTTTTTGAATGAGCGAAAAATAATAATTGGCAATTAGATTTGTCTGCT
GTAGAGAAAAACTTTCCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MKVIHFYSENADYGCFSNFSLHPVVIDGVTYLTTEHYFQAQKFMDKKIIKKIISAKKPIEAAKLGRNRDFPLRKGWESMK
DEVMLKAIRAKVEQHSEVKEILLSTGNAILVEHTEKDNYWGDGGNGSGKNRLGKILMKVRDEWNAS

Sequences:

>Translated_146_residues
MKVIHFYSENADYGCFSNFSLHPVVIDGVTYLTTEHYFQAQKFMDKKIIKKIISAKKPIEAAKLGRNRDFPLRKGWESMK
DEVMLKAIRAKVEQHSEVKEILLSTGNAILVEHTEKDNYWGDGGNGSGKNRLGKILMKVRDEWNAS
>Mature_146_residues
MKVIHFYSENADYGCFSNFSLHPVVIDGVTYLTTEHYFQAQKFMDKKIIKKIISAKKPIEAAKLGRNRDFPLRKGWESMK
DEVMLKAIRAKVEQHSEVKEILLSTGNAILVEHTEKDNYWGDGGNGSGKNRLGKILMKVRDEWNAS

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=140, Percent_Identity=57.1428571428571, Blast_Score=179, Evalue=7e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 16719; Mature: 16719

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVIHFYSENADYGCFSNFSLHPVVIDGVTYLTTEHYFQAQKFMDKKIIKKIISAKKPIE
CEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVEQHSEVKEILLSTGNAILVEHTEKDNYW
HHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
GDGGNGSGKNRLGKILMKVRDEWNAS
CCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKVIHFYSENADYGCFSNFSLHPVVIDGVTYLTTEHYFQAQKFMDKKIIKKIISAKKPIE
CEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVEQHSEVKEILLSTGNAILVEHTEKDNYW
HHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
GDGGNGSGKNRLGKILMKVRDEWNAS
CCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]