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The map label for this gene is yjgF [C]

Identifier: 116872257

GI number: 116872257

Start: 869825

End: 870202

Strand: Direct

Name: yjgF [C]

Synonym: lwe0837

Alternate gene names: 116872257

Gene position: 869825-870202 (Clockwise)

Preceding gene: 116872254

Following gene: 116872258

Centisome position: 30.91

GC content: 38.1

Gene sequence:

>378_bases
ATGGCAAAAGAAATTATTCAAACCTCGTCAGCACCAAAAGCTCTTGGACCATACTCGCAAGCTGTCAAAGTAAATGGGTT
TATCTTTACATCCGGTCAACTCGGAATTGACCCAGCAACTGGAGAATTAGCAAATGGCGCGACAAAACAAGCAGAGCAAG
CTTTTAAAAATCTAGCAGCAGTTTTAGAAGAAGCTGGTTCTGGATTAGACAAAATTGTCAAAGCAACAGTTTTTTTCAAA
GATTTAAATGAATTTACGACTGTTAATGAAGTATACGCTACATTCTTTTCCAGTGATTTCCCAGCAAGAAGTGCTTTCCA
AGTAGCTAAGTTACCACTTGATGCTGAAATTGAAATCGAAGTTATCGCAGAAGCATAA

Upstream 100 bases:

>100_bases
AAATAAATAGTTAAAACCATCAGTAAAACCCCCTTTAAATTGCTAAAACAAACTTAATTGATTAGAATAAAAGCATACCA
CAAAAGAAAGTAGGGATAAA

Downstream 100 bases:

>100_bases
ATATTCAGAAATAAATTTGACAATGACAAGAAATAAACGATATAATAAGAATCAATTACATAGCATCTTATCAAGAAAGG
TGGAGGGTTCTGGCCCGATG

Product: endoribonuclease L-PSP, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MAKEIIQTSSAPKALGPYSQAVKVNGFIFTSGQLGIDPATGELANGATKQAEQAFKNLAAVLEEAGSGLDKIVKATVFFK
DLNEFTTVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIEVIAEA

Sequences:

>Translated_125_residues
MAKEIIQTSSAPKALGPYSQAVKVNGFIFTSGQLGIDPATGELANGATKQAEQAFKNLAAVLEEAGSGLDKIVKATVFFK
DLNEFTTVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIEVIAEA
>Mature_124_residues
AKEIIQTSSAPKALGPYSQAVKVNGFIFTSGQLGIDPATGELANGATKQAEQAFKNLAAVLEEAGSGLDKIVKATVFFKD
LNEFTTVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIEVIAEA

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=124, Percent_Identity=48.3870967741936, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI87082396, Length=121, Percent_Identity=49.5867768595041, Blast_Score=119, Evalue=8e-29,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=45.9677419354839, Blast_Score=118, Evalue=1e-28,
Organism=Escherichia coli, GI1787245, Length=125, Percent_Identity=28.8, Blast_Score=66, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=46.3414634146341, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=46.3414634146341, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=46.3414634146341, Blast_Score=127, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=43.2203389830509, Blast_Score=105, Evalue=2e-24,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=42.156862745098, Blast_Score=92, Evalue=3e-20,
Organism=Drosophila melanogaster, GI19921376, Length=124, Percent_Identity=53.2258064516129, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13277; Mature: 13146

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEIIQTSSAPKALGPYSQAVKVNGFIFTSGQLGIDPATGELANGATKQAEQAFKNLAA
CCCHHHHCCCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VLEEAGSGLDKIVKATVFFKDLNEFTTVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEE
VIAEA
EEECC
>Mature Secondary Structure 
AKEIIQTSSAPKALGPYSQAVKVNGFIFTSGQLGIDPATGELANGATKQAEQAFKNLAA
CCHHHHCCCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
VLEEAGSGLDKIVKATVFFKDLNEFTTVNEVYATFFSSDFPARSAFQVAKLPLDAEIEIE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEE
VIAEA
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]