| Definition | Listeria welshimeri serovar 6b str. SLCC5334, complete genome. |
|---|---|
| Accession | NC_008555 |
| Length | 2,814,130 |
Click here to switch to the map view.
The map label for this gene is 116872211
Identifier: 116872211
GI number: 116872211
Start: 823023
End: 824903
Strand: Direct
Name: 116872211
Synonym: lwe0791
Alternate gene names: NA
Gene position: 823023-824903 (Clockwise)
Preceding gene: 116872210
Following gene: 116872212
Centisome position: 29.25
GC content: 34.93
Gene sequence:
>1881_bases ATGAATATAAGGAAAAAGTCGATATTATCTTTAATTAGTGCAGTGATACTATTGAATATCTCTATTGTAGGTGGGGTTCA ATCTTATGCAGATGTTAACGAAGAGACATCAGTTGAAGAATTTATCAACCAAGTTAATCAAGATTCTTCAACTGATAGTT CACAAGAAAACAATTTAGTAACAAGCTCTGATGAGCAAAGTGAAAAAGTAGATAATTCAGATAGTTCTGTAGACAGTTCT GCTGATAATAGTGATACTTCTTTAGATAGTGTAGAAGCAAGTACCGTAACAGAAGAATCAGTATTAGCTAATAAATCAGA TAACTTGCCTTCACCACCAAAGAAGGGCTTGCCGTTAAATGATGTTTTTGCTCCAGCTGTTGGTTCAGGAGTAAAGTATC AGAGTGATTCGCTGCTCCAATTGTCATCTGGAAAAAGGCAAGTTGGTGCAATTTGGTCGAAAAATAAAATTGATTTGAAA AAAGATTTTAAGTTGCATTTCTATTTGTATTTGGGAGATCAAGGAAGTAGTTCTGCTGATGGAATGACATTTTCACTTCA AGGATACAATAATTCATTTTTAGGCGGATCAGGTTCAAATCTAGGAATGTATAATGAGACTTATAAATATTACCTTGCGC TCGAGTTTGATACTTATTTTAATGGAGATGGTTTTGATAGTCCGCGAAATAATTCTGGATTAACTAAAATAGGCGATCAT ATTGGTTTTAACACAGGTGGAACGAATTGGCATTACTCTGCAAAAGAGTCAATAGGAAACATGTCGAATGGTAATTGGAA AGAGGTTCAAATCGTTTATAACGCGACAAGTGGTGGTACAGGACACTTGGAATACACTTATACGGATGTTGGAACAGGCT TTTCTTTTTCAACAGGGGTAAACTTTAACTTTGATGGAAAAGGAGATCATAATTTTTTAAATAAGAGTAATGTTTATTGG GGATTTACTTCTTCTACAGGCGCTCAATACGAAATTAACGCAATGTCATTTGAGGAATTGCCACAAGCTGCGTCTATTGA AGCGAAGGATTCTACATTGTATGTTGGTGAAAGTTGGAATCCAAAAGATAATTTTGTAAGTGCAATAGATGAAGATGGGA ACAGCATTTCTTTTGATGATAATCGACTTTCTGTCATTGGTGATGTTGACACGAACAAATCTGGTGATTATAAAATTACT TACAAGTATCAAGGCACGTATCAAGAAACTTCAAAAGAAATCACAGTAACTGTGAAAGAGGACAAATCAAGTTTGAAGGC GAAAAATCTTATCTATCATGTAGGAGAAATATTTAATGAAAAAGATGCCTTTGTACAAGCTACAGATCAGGATGGCAATC CAATTGACTACTCCAAGATTAAACTATATATGCCATATACGTTAGATACTAGTAAAGTAAAGACCTATAAAGGGAACTAT TACTATTACTACAGGGAAAGTGATGGTAAACTTATTAAGTCTAATTTATTTGATGTTACGATTATTCCTTATGAACAAAC AATACAAGTACCAAAAACAATGGATTTTGGGAATTATCAATTGGGAACAGCAAACCAACTTTATTGGAAGCCGGGAAATT CAGTTTCAGTTTCAGATGAAGGGCGACAAGGTTGGAGCTTGTCCGTTAAATTAGTCAATAGTGCAAATCTTGATTTTGGA AACTACTTGTATGTTGGTGATCAGCAATTTGGAGCAGAAGTAGTAAATATTGATGATGGCGTAGGCTCGCAACAAATTAC AGATGCCTTGATAAATGATTCCTTCGTTTATGTTGATTACACCAGAGCTAAAACATTGCGAAAAGATTCTGGAACGCTTG AATGGAGCTTGACGCCTAGTGTAAAGGGGGCTGAAGAATAA
Upstream 100 bases:
>100_bases TTTATGATGTTGAAAATAATTTTGAATAAATTTACAAATCATAATTAAAACTGATTTTAGAAATGAGAAAACAATATCTG GAACAGGTAGGGATGATAAA
Downstream 100 bases:
>100_bases TAAAAAAAACCTCTCAGTACTTGTAGGATTCAACTAGCTGTCTGTCAATGGAGAAGAGATTTAATTAAAAGTTATAGGGA CACTAACTGAGTCCGATTCA
Product: putative secreted protein
Products: NA
Alternate protein names: Fructan Hydrolase; Surface Protein; Legume Lectins Beta Domain Protein; Peptidoglycan Bound Protein; Cell Wall Anchor Domain-Containing Protein; Bacterial Ig-Like Domain-Containing Protein; Cell Surface Protein; Fructan Beta-Fructosidase; Secreted Protein; Beta-Fructosidase
Number of amino acids: Translated: 626; Mature: 626
Protein sequence:
>626_residues MNIRKKSILSLISAVILLNISIVGGVQSYADVNEETSVEEFINQVNQDSSTDSSQENNLVTSSDEQSEKVDNSDSSVDSS ADNSDTSLDSVEASTVTEESVLANKSDNLPSPPKKGLPLNDVFAPAVGSGVKYQSDSLLQLSSGKRQVGAIWSKNKIDLK KDFKLHFYLYLGDQGSSSADGMTFSLQGYNNSFLGGSGSNLGMYNETYKYYLALEFDTYFNGDGFDSPRNNSGLTKIGDH IGFNTGGTNWHYSAKESIGNMSNGNWKEVQIVYNATSGGTGHLEYTYTDVGTGFSFSTGVNFNFDGKGDHNFLNKSNVYW GFTSSTGAQYEINAMSFEELPQAASIEAKDSTLYVGESWNPKDNFVSAIDEDGNSISFDDNRLSVIGDVDTNKSGDYKIT YKYQGTYQETSKEITVTVKEDKSSLKAKNLIYHVGEIFNEKDAFVQATDQDGNPIDYSKIKLYMPYTLDTSKVKTYKGNY YYYYRESDGKLIKSNLFDVTIIPYEQTIQVPKTMDFGNYQLGTANQLYWKPGNSVSVSDEGRQGWSLSVKLVNSANLDFG NYLYVGDQQFGAEVVNIDDGVGSQQITDALINDSFVYVDYTRAKTLRKDSGTLEWSLTPSVKGAEE
Sequences:
>Translated_626_residues MNIRKKSILSLISAVILLNISIVGGVQSYADVNEETSVEEFINQVNQDSSTDSSQENNLVTSSDEQSEKVDNSDSSVDSS ADNSDTSLDSVEASTVTEESVLANKSDNLPSPPKKGLPLNDVFAPAVGSGVKYQSDSLLQLSSGKRQVGAIWSKNKIDLK KDFKLHFYLYLGDQGSSSADGMTFSLQGYNNSFLGGSGSNLGMYNETYKYYLALEFDTYFNGDGFDSPRNNSGLTKIGDH IGFNTGGTNWHYSAKESIGNMSNGNWKEVQIVYNATSGGTGHLEYTYTDVGTGFSFSTGVNFNFDGKGDHNFLNKSNVYW GFTSSTGAQYEINAMSFEELPQAASIEAKDSTLYVGESWNPKDNFVSAIDEDGNSISFDDNRLSVIGDVDTNKSGDYKIT YKYQGTYQETSKEITVTVKEDKSSLKAKNLIYHVGEIFNEKDAFVQATDQDGNPIDYSKIKLYMPYTLDTSKVKTYKGNY YYYYRESDGKLIKSNLFDVTIIPYEQTIQVPKTMDFGNYQLGTANQLYWKPGNSVSVSDEGRQGWSLSVKLVNSANLDFG NYLYVGDQQFGAEVVNIDDGVGSQQITDALINDSFVYVDYTRAKTLRKDSGTLEWSLTPSVKGAEE >Mature_626_residues MNIRKKSILSLISAVILLNISIVGGVQSYADVNEETSVEEFINQVNQDSSTDSSQENNLVTSSDEQSEKVDNSDSSVDSS ADNSDTSLDSVEASTVTEESVLANKSDNLPSPPKKGLPLNDVFAPAVGSGVKYQSDSLLQLSSGKRQVGAIWSKNKIDLK KDFKLHFYLYLGDQGSSSADGMTFSLQGYNNSFLGGSGSNLGMYNETYKYYLALEFDTYFNGDGFDSPRNNSGLTKIGDH IGFNTGGTNWHYSAKESIGNMSNGNWKEVQIVYNATSGGTGHLEYTYTDVGTGFSFSTGVNFNFDGKGDHNFLNKSNVYW GFTSSTGAQYEINAMSFEELPQAASIEAKDSTLYVGESWNPKDNFVSAIDEDGNSISFDDNRLSVIGDVDTNKSGDYKIT YKYQGTYQETSKEITVTVKEDKSSLKAKNLIYHVGEIFNEKDAFVQATDQDGNPIDYSKIKLYMPYTLDTSKVKTYKGNY YYYYRESDGKLIKSNLFDVTIIPYEQTIQVPKTMDFGNYQLGTANQLYWKPGNSVSVSDEGRQGWSLSVKLVNSANLDFG NYLYVGDQQFGAEVVNIDDGVGSQQITDALINDSFVYVDYTRAKTLRKDSGTLEWSLTPSVKGAEE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69033; Mature: 69033
Theoretical pI: Translated: 4.31; Mature: 4.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIRKKSILSLISAVILLNISIVGGVQSYADVNEETSVEEFINQVNQDSSTDSSQENNLV CCCCHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEE TSSDEQSEKVDNSDSSVDSSADNSDTSLDSVEASTVTEESVLANKSDNLPSPPKKGLPLN ECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCCCCH DVFAPAVGSGVKYQSDSLLQLSSGKRQVGAIWSKNKIDLKKDFKLHFYLYLGDQGSSSAD HHHCCCCCCCCEECCCCEEEECCCCCEEEEEECCCCCCEEECCEEEEEEEECCCCCCCCC GMTFSLQGYNNSFLGGSGSNLGMYNETYKYYLALEFDTYFNGDGFDSPRNNSGLTKIGDH CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEECCCCCCCCCCCCCCHHHHHH IGFNTGGTNWHYSAKESIGNMSNGNWKEVQIVYNATSGGTGHLEYTYTDVGTGFSFSTGV CCCCCCCCCEEEEHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCE NFNFDGKGDHNFLNKSNVYWGFTSSTGAQYEINAMSFEELPQAASIEAKDSTLYVGESWN EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCHHHCCCCCCEECCCCEEEECCCCC PKDNFVSAIDEDGNSISFDDNRLSVIGDVDTNKSGDYKITYKYQGTYQETSKEITVTVKE CHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCCEEEEEEECCCHHCCCCEEEEEEEC DKSSLKAKNLIYHVGEIFNEKDAFVQATDQDGNPIDYSKIKLYMPYTLDTSKVKTYKGNY CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEEECCE YYYYRESDGKLIKSNLFDVTIIPYEQTIQVPKTMDFGNYQLGTANQLYWKPGNSVSVSDE EEEEECCCCCEEECCCEEEEEECCHHEECCCCCCCCCCEEECCCCEEEECCCCEEEECCC GRQGWSLSVKLVNSANLDFGNYLYVGDQQFGAEVVNIDDGVGSQQITDALINDSFVYVDY CCCCCEEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEE TRAKTLRKDSGTLEWSLTPSVKGAEE HHHHHEECCCCEEEEEECCCCCCCCC >Mature Secondary Structure MNIRKKSILSLISAVILLNISIVGGVQSYADVNEETSVEEFINQVNQDSSTDSSQENNLV CCCCHHHHHHHHHHHHHHEEEEECCCHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEE TSSDEQSEKVDNSDSSVDSSADNSDTSLDSVEASTVTEESVLANKSDNLPSPPKKGLPLN ECCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCCCCCCCCCCCCH DVFAPAVGSGVKYQSDSLLQLSSGKRQVGAIWSKNKIDLKKDFKLHFYLYLGDQGSSSAD HHHCCCCCCCCEECCCCEEEECCCCCEEEEEECCCCCCEEECCEEEEEEEECCCCCCCCC GMTFSLQGYNNSFLGGSGSNLGMYNETYKYYLALEFDTYFNGDGFDSPRNNSGLTKIGDH CEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEECCCCCCCCCCCCCCHHHHHH IGFNTGGTNWHYSAKESIGNMSNGNWKEVQIVYNATSGGTGHLEYTYTDVGTGFSFSTGV CCCCCCCCCEEEEHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCEEEECCE NFNFDGKGDHNFLNKSNVYWGFTSSTGAQYEINAMSFEELPQAASIEAKDSTLYVGESWN EEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCHHHCCCCCCEECCCCEEEECCCCC PKDNFVSAIDEDGNSISFDDNRLSVIGDVDTNKSGDYKITYKYQGTYQETSKEITVTVKE CHHHHHHHHCCCCCEEEECCCEEEEEEECCCCCCCCEEEEEEECCCHHCCCCEEEEEEEC DKSSLKAKNLIYHVGEIFNEKDAFVQATDQDGNPIDYSKIKLYMPYTLDTSKVKTYKGNY CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEEECCE YYYYRESDGKLIKSNLFDVTIIPYEQTIQVPKTMDFGNYQLGTANQLYWKPGNSVSVSDE EEEEECCCCCEEECCCEEEEEECCHHEECCCCCCCCCCEEECCCCEEEECCCCEEEECCC GRQGWSLSVKLVNSANLDFGNYLYVGDQQFGAEVVNIDDGVGSQQITDALINDSFVYVDY CCCCCEEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEE TRAKTLRKDSGTLEWSLTPSVKGAEE HHHHHEECCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA