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The map label for this gene is smpB

Identifier: 116690020

GI number: 116690020

Start: 2214732

End: 2215178

Strand: Direct

Name: smpB

Synonym: Bcen2424_1999

Alternate gene names: 116690020

Gene position: 2214732-2215178 (Clockwise)

Preceding gene: 116690017

Following gene: 116690024

Centisome position: 63.57

GC content: 61.97

Gene sequence:

>447_bases
ATGAGCATCATCGACAACAGGAAAGCGCACTTCGATTATCACATCGAGGAACGCTACGAGGCGGGGCTCGTGCTGGAGGG
CTGGGAAGTCAAGGCGCTGCGCGCCGGACGCGGCCAGATCAAGGAAGGCTACGTCGTGGTGAAGAACGCCGAGATCTTCC
TGATCGGGACCCATATCAGCCCGCTGCCCGAAGCCTCGACGCACATCAAGCCCGACCCGGTTCGCACGCGCAAGCTGCTG
CTGCACCGCGAGGAAATCAAGAAGCTGATCGGCAAGGTCGAGCAGCGCGGCTACACGCTCGTGCCGCTTAACTTCCACTA
CAAGGGCGGTCGCGTGAAATGCGACATCGCGCTCGCGAAGGGCAAGAAGCTGCACGACAAGCGCGAAACCGAGAAGAAGC
GCGACTGGGAACGCGAGAAGGCACGCATCATGCGCGCCGGCACCTGA

Upstream 100 bases:

>100_bases
TAAATCGCGCGGCATCGCTTAAAGTGGGAACGCCAAGCCGGGCGATACGCGCCCCGCTTTGCTAAAATCGTGATTTTAAA
CGAGTTGGCCCGATCCTTTC

Downstream 100 bases:

>100_bases
CACACACGGCGTTCATCGCAAACGACACGGCCCGCTCGAAGCGGGCCGTGTCGCTTTGGACTGCCTGAATCGCGCCGGCC
GGTCGCGGCTGCGCGACGAT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 147

Protein sequence:

>148_residues
MSIIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPLPEASTHIKPDPVRTRKLL
LHREEIKKLIGKVEQRGYTLVPLNFHYKGGRVKCDIALAKGKKLHDKRETEKKRDWEREKARIMRAGT

Sequences:

>Translated_148_residues
MSIIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPLPEASTHIKPDPVRTRKLL
LHREEIKKLIGKVEQRGYTLVPLNFHYKGGRVKCDIALAKGKKLHDKRETEKKRDWEREKARIMRAGT
>Mature_147_residues
SIIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPLPEASTHIKPDPVRTRKLLL
HREEIKKLIGKVEQRGYTLVPLNFHYKGGRVKCDIALAKGKKLHDKRETEKKRDWEREKARIMRAGT

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=144, Percent_Identity=50, Blast_Score=156, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_BURCA (Q1BHG2)

Other databases:

- EMBL:   CP000380
- RefSeq:   YP_625916.1
- ProteinModelPortal:   Q1BHG2
- SMR:   Q1BHG2
- STRING:   Q1BHG2
- GeneID:   4097292
- GenomeReviews:   CP000380_GR
- KEGG:   bcn:Bcen_6078
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   BCEN331271:BCEN_6078-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 17163; Mature: 17032

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHIS
CCCCCCCCCEEEEEECCCCCCCEEEECCEEEEEECCCCCCCCCEEEEECCEEEEEECCCC
PLPEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKGGRVKCDIALAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEECC
GKKLHDKRETEKKRDWEREKARIMRAGT
CCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SIIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHIS
CCCCCCCCEEEEEECCCCCCCEEEECCEEEEEECCCCCCCCCEEEEECCEEEEEECCCC
PLPEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKGGRVKCDIALAK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEEEEECC
GKKLHDKRETEKKRDWEREKARIMRAGT
CCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA