Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is hyi [H]
Identifier: 116689900
GI number: 116689900
Start: 2084840
End: 2085649
Strand: Direct
Name: hyi [H]
Synonym: Bcen2424_1879
Alternate gene names: 116689900
Gene position: 2084840-2085649 (Clockwise)
Preceding gene: 116689899
Following gene: 116689901
Centisome position: 59.84
GC content: 66.79
Gene sequence:
>810_bases ATGCCGAAGTTTGCTGCAAACCTGACCATGCTGTTCAACGAAGTGCCGTTCCTCGACCGCTTCAAGGCGGCCGCGGACGC GGGCTTCGACGCCGTCGAGTTCCTGTTCCCGTACCCGTACGCGAAAGAGGAACTCGCCGAGCGGCTCGAGACGCATCGCC TGCGCCTCGTGCTGCACAACCTGCCCGCCGGCAACTGGGACCAGGGCGAGCGCGGCATCGCGTGCCTGCCCGATCGCGTC GGCGAATTCCAGGAAGGCGTCGGCCGTGCGATCGAGTACGCGAAGGCGCTGAAGGTGCCCCAGCTGAACTGCCTCGTCGG CATTCCGTCGGCGAGCACGGCGCGCGACAAGACGTTCGTGACGATCGTCGACAACCTGCGCTTCGCCGCCGACGCACTGA AGCGCGAAGGCATCCGCCTGCTCGTCGAGCCGTGCAACAGCTTCGACATCCCGGGCTTCGCGCTGAACCGCTCGTCGGAA GGGCTCGACGTGATCCGCGCGGTCGGCTCGGACAACCTGTTCCTGCAGTACGACATCTATCACATGCAACGCATGGAAGG CGAACTGGCCGCGACGATCGAACGCAATCTCGCGTCGATCGGCCACGTCCAGCTCGCGGACAACCCGGGCCGCAACGAGC CGGGCACCGGCGAGATCAACTATGCGTTCCTGTTCGCGCTGCTCGACCGGCTCGGCTATGCCGGCTACGTCGGCTGCGAA TACAAGCCCCGTACCACCACGACGGAAGGCCTCGGCTGGCTGCAAAGCGTGGCCGGCTGCGCACCGGCCTCGGCGCGTCG CGCCGCCTGA
Upstream 100 bases:
>100_bases GCCCCGACCGCGATCTCGATGCTCGACTGAACCGACTGAACCGACTGAACCGACTGAACCGCACGACTTTTTTGACTGAC CGACCGAAGAGGCTTAGCTC
Downstream 100 bases:
>100_bases ATCGCACCCTTCCCGTTTTCAGCCCCATAGGAGACTTTCACATGGCAACCATCGGTTTCATCGGCCTCGGCATCATGGGC GCGCACATGGCGCGCAACCT
Product: hydroxypyruvate isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 269; Mature: 268
Protein sequence:
>269_residues MPKFAANLTMLFNEVPFLDRFKAAADAGFDAVEFLFPYPYAKEELAERLETHRLRLVLHNLPAGNWDQGERGIACLPDRV GEFQEGVGRAIEYAKALKVPQLNCLVGIPSASTARDKTFVTIVDNLRFAADALKREGIRLLVEPCNSFDIPGFALNRSSE GLDVIRAVGSDNLFLQYDIYHMQRMEGELAATIERNLASIGHVQLADNPGRNEPGTGEINYAFLFALLDRLGYAGYVGCE YKPRTTTTEGLGWLQSVAGCAPASARRAA
Sequences:
>Translated_269_residues MPKFAANLTMLFNEVPFLDRFKAAADAGFDAVEFLFPYPYAKEELAERLETHRLRLVLHNLPAGNWDQGERGIACLPDRV GEFQEGVGRAIEYAKALKVPQLNCLVGIPSASTARDKTFVTIVDNLRFAADALKREGIRLLVEPCNSFDIPGFALNRSSE GLDVIRAVGSDNLFLQYDIYHMQRMEGELAATIERNLASIGHVQLADNPGRNEPGTGEINYAFLFALLDRLGYAGYVGCE YKPRTTTTEGLGWLQSVAGCAPASARRAA >Mature_268_residues PKFAANLTMLFNEVPFLDRFKAAADAGFDAVEFLFPYPYAKEELAERLETHRLRLVLHNLPAGNWDQGERGIACLPDRVG EFQEGVGRAIEYAKALKVPQLNCLVGIPSASTARDKTFVTIVDNLRFAADALKREGIRLLVEPCNSFDIPGFALNRSSEG LDVIRAVGSDNLFLQYDIYHMQRMEGELAATIERNLASIGHVQLADNPGRNEPGTGEINYAFLFALLDRLGYAGYVGCEY KPRTTTTEGLGWLQSVAGCAPASARRAA
Specific function: Catalyzes the reversible isomerization between hydroxypyruvate and 2-hydroxy-3-oxopropanoate (also termed tartronate semialdehyde) [H]
COG id: COG3622
COG function: function code G; Hydroxypyruvate isomerase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hyi family [H]
Homologues:
Organism=Homo sapiens, GI300068962, Length=261, Percent_Identity=41.3793103448276, Blast_Score=189, Evalue=2e-48, Organism=Homo sapiens, GI300068964, Length=243, Percent_Identity=39.5061728395062, Blast_Score=161, Evalue=6e-40, Organism=Escherichia coli, GI1786718, Length=254, Percent_Identity=55.1181102362205, Blast_Score=290, Evalue=5e-80, Organism=Escherichia coli, GI1789095, Length=256, Percent_Identity=42.96875, Blast_Score=227, Evalue=6e-61, Organism=Caenorhabditis elegans, GI17552022, Length=254, Percent_Identity=38.1889763779528, Blast_Score=182, Evalue=1e-46, Organism=Drosophila melanogaster, GI17530883, Length=260, Percent_Identity=34.6153846153846, Blast_Score=158, Evalue=3e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017643 - InterPro: IPR013022 - InterPro: IPR012307 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.22 [H]
Molecular weight: Translated: 29603; Mature: 29472
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKFAANLTMLFNEVPFLDRFKAAADAGFDAVEFLFPYPYAKEELAERLETHRLRLVLHN CCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LPAGNWDQGERGIACLPDRVGEFQEGVGRAIEYAKALKVPQLNCLVGIPSASTARDKTFV CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEE TIVDNLRFAADALKREGIRLLVEPCNSFDIPGFALNRSSEGLDVIRAVGSDNLFLQYDIY EEHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHCCCCCEEEEEHHH HMQRMEGELAATIERNLASIGHVQLADNPGRNEPGTGEINYAFLFALLDRLGYAGYVGCE HHHHHCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCC YKPRTTTTEGLGWLQSVAGCAPASARRAA CCCCCCCHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure PKFAANLTMLFNEVPFLDRFKAAADAGFDAVEFLFPYPYAKEELAERLETHRLRLVLHN CCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LPAGNWDQGERGIACLPDRVGEFQEGVGRAIEYAKALKVPQLNCLVGIPSASTARDKTFV CCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEE TIVDNLRFAADALKREGIRLLVEPCNSFDIPGFALNRSSEGLDVIRAVGSDNLFLQYDIY EEHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCCCCCHHHHHHCCCCCEEEEEHHH HMQRMEGELAATIERNLASIGHVQLADNPGRNEPGTGEINYAFLFALLDRLGYAGYVGCE HHHHHCCHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECCC YKPRTTTTEGLGWLQSVAGCAPASARRAA CCCCCCCHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8440684; 10561547; 9278503 [H]