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The map label for this gene is arnD [H]

Identifier: 116689884

GI number: 116689884

Start: 2068675

End: 2069571

Strand: Direct

Name: arnD [H]

Synonym: Bcen2424_1863

Alternate gene names: 116689884

Gene position: 2068675-2069571 (Clockwise)

Preceding gene: 116689883

Following gene: 116689885

Centisome position: 59.38

GC content: 67.45

Gene sequence:

>897_bases
TTGGCTCGTATCGTCCTCAAGATCGACGTCGACACGCTGCGCGGCACGCGCGAAGGCGTGCCGAACCTCGCGCGCATCTT
CGATCGCTTCAATGCGCGCGCGACCTTCCTCTTCAGCCTCGGCCCGGATCACACCGGCTGGGCACTGCGGCGCGTGTTCC
GCCCGGGCTTCCTGAAGAAGGTGTCGCGCACGTCGGTGGTCGAACACTACGGCGTGAAGCAGCTGATGTACGGCGTGCTG
CTGCCCGGTCCCGACATCGGCCGCCGCGCGATCGCCGACATGCGCGCGATTCACGAGGCCGGCTTCGAATGCGGGATCCA
CACGTGGGATCACGTGTATTGGCAAGACAACGTGCGCGTACGCGACCGCGACTGGACCGCGCGTGAAATGCAGAAGAGTC
ACGCGCGCTTCATCGAGATCTTCGGCGCGCCGCCCGTCACGCACGGCGCGGCCGGCTGGCAGATGAACGATGCCGCGTTC
GAGCAGATCGACGCGTGGGGGATGCGCTACGCATCCGACGGCCGCGGCCACTCGCCGTACCTGCCCGTCGTCGGCGGCCG
CACGCTGTCGCATGTGCAAATGCCGACCACGCTGCCGACGCTCGACGAAGTACTCGGCATCGACGGCGTCGACACGCACA
ACGTCGCCGCGCACATCCTCGCGTTCACCGCAACCAATCCGCACGACCAGGTGTTCACGCTGCATGCGGAGCTGGAAGGC
CAGAAGCTCGCGCCCGTGTTCGAGCAACTGCTCGCCGGCTGGCGCGCGCAAGGCCACACGTTCGCGACGATGGGCGACTA
CCACGCGACGCTGGACCGCGACTCGCTGCCATCGTACCCTGTCACGTGGGGCGAAATCCCCGGCCGCTCCGGCGAACTGA
TCGTCCAGCCCGACTGA

Upstream 100 bases:

>100_bases
ACGTTCGACGACGCGCTGCGCAACATCTTCGAAGCGTATCGCGGCCACGTCGCCGACGCGCGCGCGCTCGTCGAACAGCA
AGGCTGACCGGGACGTTCGC

Downstream 100 bases:

>100_bases
GTTCGCGCGCGAGCCGGCGTCGCCGCTCCGCCCTTGCGGCGCGCTGCCGCGACGCCCCGCCGAACCGCGCCGCCGCGGCG
GCGCCCTTCCATAACAACAG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MARIVLKIDVDTLRGTREGVPNLARIFDRFNARATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVEHYGVKQLMYGVL
LPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRVRDRDWTAREMQKSHARFIEIFGAPPVTHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHSPYLPVVGGRTLSHVQMPTTLPTLDEVLGIDGVDTHNVAAHILAFTATNPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD

Sequences:

>Translated_298_residues
MARIVLKIDVDTLRGTREGVPNLARIFDRFNARATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVEHYGVKQLMYGVL
LPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRVRDRDWTAREMQKSHARFIEIFGAPPVTHGAAGWQMNDAAF
EQIDAWGMRYASDGRGHSPYLPVVGGRTLSHVQMPTTLPTLDEVLGIDGVDTHNVAAHILAFTATNPHDQVFTLHAELEG
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD
>Mature_297_residues
ARIVLKIDVDTLRGTREGVPNLARIFDRFNARATFLFSLGPDHTGWALRRVFRPGFLKKVSRTSVVEHYGVKQLMYGVLL
PGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRVRDRDWTAREMQKSHARFIEIFGAPPVTHGAAGWQMNDAAFE
QIDAWGMRYASDGRGHSPYLPVVGGRTLSHVQMPTTLPTLDEVLGIDGVDTHNVAAHILAFTATNPHDQVFTLHAELEGQ
KLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=298, Percent_Identity=36.5771812080537, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33339; Mature: 33208

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARIVLKIDVDTLRGTREGVPNLARIFDRFNARATFLFSLGPDHTGWALRRVFRPGFLKK
CCEEEEEEEHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGVKQLMYGVLLPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRV
HHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEE
RDRDWTAREMQKSHARFIEIFGAPPVTHGAAGWQMNDAAFEQIDAWGMRYASDGRGHSPY
ECCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCCCCC
LPVVGGRTLSHVQMPTTLPTLDEVLGIDGVDTHNVAAHILAFTATNPHDQVFTLHAELEG
CEEECCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHEEEEEEECCCCCCEEEEEEEECCC
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD
CCHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECC
>Mature Secondary Structure 
ARIVLKIDVDTLRGTREGVPNLARIFDRFNARATFLFSLGPDHTGWALRRVFRPGFLKK
CEEEEEEEHHHHCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCHHHHH
VSRTSVVEHYGVKQLMYGVLLPGPDIGRRAIADMRAIHEAGFECGIHTWDHVYWQDNVRV
HHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEE
RDRDWTAREMQKSHARFIEIFGAPPVTHGAAGWQMNDAAFEQIDAWGMRYASDGRGHSPY
ECCCCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCEECCCCCCCCCC
LPVVGGRTLSHVQMPTTLPTLDEVLGIDGVDTHNVAAHILAFTATNPHDQVFTLHAELEG
CEEECCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHEEEEEEECCCCCCEEEEEEEECCC
QKLAPVFEQLLAGWRAQGHTFATMGDYHATLDRDSLPSYPVTWGEIPGRSGELIVQPD
CCHHHHHHHHHHHHCCCCCEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA