Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689839
Identifier: 116689839
GI number: 116689839
Start: 2020506
End: 2021360
Strand: Direct
Name: 116689839
Synonym: Bcen2424_1818
Alternate gene names: NA
Gene position: 2020506-2021360 (Clockwise)
Preceding gene: 116689837
Following gene: 116689849
Centisome position: 58.0
GC content: 69.47
Gene sequence:
>855_bases ATGCGATTGATCGACTGGAACATCCAATGGGGTCGGGACGCGGACGGCGTCGTCGATCTTCCCCGCACCGTCGCGGCCAT CCGCCGGCTCGGCGATTTCGACGTGCTCTGCCTACAGGAGCTCACACGCGGCTTCGATGCTCTATCCGGCCGGCCCGGCC CCGACCAGTTCGCCGAACTCGCGGCGCTGCTGCCCGGCTATACGATCGTCGACGCCATCGGCGCCGATCTGCCGGCCATC CGGCCGGGCGCCCCGCGCCGCCAGTTCGGCAACGCAATTGCGACGCGGCTGCCGGTCGGGCGCGTGCTGCGCCAATCGCT GCCGTGGCCGGCCGATGCCGGCGCGCCGTCGATGCCGCGCGTCGCGCTGGATATCGAGTTGCAGGCGTCCTTCGGGTCGT TGCGCGTGGTCACCACGCATCTGGAGTACTACTCGGCGCGCCAGCGGCTTGCTCAAGTCGACGCGCTCCGCGACCGGCAT CGCGAGGCCTGCGCGCACGCGGATCGACCCGCTCCCGCCGAAACGCCCGAGGGGCCGTTCAGCGCGACTGGACAGCCGCG CGATGCGATCGTCTGCGGCGATTTCAACAGCGCATTCGACAGCGACGCGTACCGGCGCTTGCTGGAGCCGATTGCCGACG CACCAGGTTTCGTCGATGCGTGGATCGCGCGGCACCCCGGCCATACACCGCCGCCGACGGCCGGCATCTACGATACGGTG CAATGGTCGGACGGGCCGCTCGCGTGCGATTTCGTGTTCGTGACCGACACACTGTTGCCGCGCGTCATCGGCTGCGAGAT CGACGGCGACGTACGTGCGTCCGATCACCAGCCGGTGCTGCTCGAACTCGGCTGA
Upstream 100 bases:
>100_bases ACCGCCCCCATTGCCCGCAGGGAGGCCGCGTGCGATACGCAGCGCGGCCCCCACTGCGGCACGGGTTCTGCTCGCAGCAG CAGACCAAGGAGACTCGACC
Downstream 100 bases:
>100_bases TCGCCCCGGCGACGGCGCGGCCCGCTCGCGCTACGCGTCGAAGCCGGCGAGGTATTCGACCCAGTGCGGCGCCGGTTCCT GCGCAAGCGCGTTCTTCACG
Product: endonuclease/exonuclease/phosphatase
Products: NA
Alternate protein names: Metal-Dependent Hydrolase; Phosphatase; Endonuclease / Exonuclease / Phosphatase; Endonuclease/Exonuclease/Phosphatase Family Protein; Metal-Dependent Exonuclease Protein; Phosphatase Protein
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MRLIDWNIQWGRDADGVVDLPRTVAAIRRLGDFDVLCLQELTRGFDALSGRPGPDQFAELAALLPGYTIVDAIGADLPAI RPGAPRRQFGNAIATRLPVGRVLRQSLPWPADAGAPSMPRVALDIELQASFGSLRVVTTHLEYYSARQRLAQVDALRDRH REACAHADRPAPAETPEGPFSATGQPRDAIVCGDFNSAFDSDAYRRLLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTV QWSDGPLACDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLELG
Sequences:
>Translated_284_residues MRLIDWNIQWGRDADGVVDLPRTVAAIRRLGDFDVLCLQELTRGFDALSGRPGPDQFAELAALLPGYTIVDAIGADLPAI RPGAPRRQFGNAIATRLPVGRVLRQSLPWPADAGAPSMPRVALDIELQASFGSLRVVTTHLEYYSARQRLAQVDALRDRH REACAHADRPAPAETPEGPFSATGQPRDAIVCGDFNSAFDSDAYRRLLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTV QWSDGPLACDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLELG >Mature_284_residues MRLIDWNIQWGRDADGVVDLPRTVAAIRRLGDFDVLCLQELTRGFDALSGRPGPDQFAELAALLPGYTIVDAIGADLPAI RPGAPRRQFGNAIATRLPVGRVLRQSLPWPADAGAPSMPRVALDIELQASFGSLRVVTTHLEYYSARQRLAQVDALRDRH REACAHADRPAPAETPEGPFSATGQPRDAIVCGDFNSAFDSDAYRRLLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTV QWSDGPLACDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLELG
Specific function: Unknown
COG id: COG3568
COG function: function code R; Metal-dependent hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30843; Mature: 30843
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLIDWNIQWGRDADGVVDLPRTVAAIRRLGDFDVLCLQELTRGFDALSGRPGPDQFAEL CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH AALLPGYTIVDAIGADLPAIRPGAPRRQFGNAIATRLPVGRVLRQSLPWPADAGAPSMPR HHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCE VALDIELQASFGSLRVVTTHLEYYSARQRLAQVDALRDRHREACAHADRPAPAETPEGPF EEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SATGQPRDAIVCGDFNSAFDSDAYRRLLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTV CCCCCCCCEEEECCCCCHHCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCE QWSDGPLACDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLELG EECCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MRLIDWNIQWGRDADGVVDLPRTVAAIRRLGDFDVLCLQELTRGFDALSGRPGPDQFAEL CEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH AALLPGYTIVDAIGADLPAIRPGAPRRQFGNAIATRLPVGRVLRQSLPWPADAGAPSMPR HHHCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCE VALDIELQASFGSLRVVTTHLEYYSARQRLAQVDALRDRHREACAHADRPAPAETPEGPF EEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SATGQPRDAIVCGDFNSAFDSDAYRRLLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTV CCCCCCCCEEEECCCCCHHCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCE QWSDGPLACDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLELG EECCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA