| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yoaA [C]
Identifier: 116689816
GI number: 116689816
Start: 1993182
End: 1995431
Strand: Reverse
Name: yoaA [C]
Synonym: Bcen2424_1795
Alternate gene names: 116689816
Gene position: 1995431-1993182 (Counterclockwise)
Preceding gene: 116689817
Following gene: 116689814
Centisome position: 57.28
GC content: 68.31
Gene sequence:
>2250_bases TTGAATTCACCGCTTGAAGCCACCCCCGATGCCCGGCGTGACACGACGTCCGCCGGGCGCGTTCGTGCGTCCGAAGGCAC CTTTGAGCTGAGCCGCAAGCGCGTCGACGAGCTCGACACGATCTTTGGCGAAGGCGGGTTGCTGGCGCGCGCGCTCGACG GGTACCGACCGCGTACGTCGCAGATCGAGATGGCGCGCGCGGTCGCGTCCGCGATGGAGGCATCCGCGCGCCGGATGCCC GAGCCCGAGATCTTCGAAACCCGCAAGCGGCCGGCACGCCGCTTGGGCGACGCCGACAAGACGACCGGAGCGGCCGCGGA CGATGCCGCGGCAACCGAATCCGACAGCGACGCAGGCGACAACACGCTGATCGTCGAGGCCGGCACGGGTACCGGCAAGA CCTACGCGTATCTCGTGCCCGCAATGCTGTGGGGCGGCAAGGTGATCGTGTCGACCGGCACGAAGCACCTGCAGGACCAG CTGTTCCAGCGCGACATCCCGACCGTGCGCAATGCGCTCGCGGTGCCGGTGTCGGTCGCGATGCTCAAGGGCCGCGCCAA CTACCTGTGCCACTACTACCTGCAACGCACGGCCGACAACGGCCGGCTGCCGTCGCGGCAGGACACGGCCTATCTGCAGG AAATCGTCCGCTTCGCGAAAATCACGAAGAGCGGCGACAAGGCCGAACTCGCGAGCGTGCCGGAAAACGCGCCCGTGTGG TCGATGGTCACGTCGACGCGCGACAACTGCCTCGGCCAGGAATGCCCGCACTACAAGGAATGCTTCGTGATGCAGGCGCG GCGCGAGGCGCAGCAGGCGGACATCGTCGTCGTCAACCATCACCTGTTCTTCGCGGACATCATGCTGCGCGACACGGGGA TGGCCGAGCTGCTGCCGAACGCGAACACGATCATCTTCGACGAAGCGCATCAGCTGCCGGAGACGGCGACGCTGTTCTTC GGCGAGACGCTGTCGACGACGCAGATCCTCGAACTCGCGCGCGACACGGTCGCGGAAGGCCTGAGCCATGCGCGCGACGC GGTCGAATGGGTGAAGCTCGGCGGTGATCTCGAGCGCGCGGCGCGTGACTTGCGCCTGGCGTTCGCCGACGGCCAGATCG TGCGCATGTCGCTTGCGCAGCTCGGCGACAATCACCCGATGTTCGGTGCGCTCGACGCGCTCGACGTGGCGCTCGATGCG CTCGCCTCGGCGCTCGCGAGCCAGGCCGAGCGCGCGGAATCGCTCGGCGCATGCCTGCGGCGCGCGCGCGAGCTGCAGGA CCTGCTGGCCGGCTGGGTCGCGCCCGGCGCGGCGGAAGCGGCCGCGCAAGCCGACGCGGCAGCGGCCGGCGACAAGGCGG CATCCGACGGCGATCCGAACGAGAAGGTGCGCTGGGTCGAGGTGTTCGCGCATACCGTGCAACTGCACGAAACGCCGCTG TCGGTCGCGCCGATCTTTGCGAAGCAGCGTGCGGGCGTGCCGCGTGCATGGGTGTTCACGTCGGCCACGTTGTCGGTGCG CGGCGATTTCACGCACTATGCGGCGCAGATGGGCCTTAGCTCGCGTCGTTCGATGACGCTCGCCAGCCCGTTCGATTACC AGTCGCAGGGGCTGCTGTACGTGCCGCGCAACCTGCCGCAGCCGTCTTCGCCGGCGTTTACCGACGCCGTGTTCGATGCC GCGCTGCCGGCGATCGAGGCATCCGGCGGCGGCGTGTTCATGCTGTGCACGACGCTACGTGCGGTCGACCGGATCGCGTC GAAGCTGCGCGACGTGATCGAATCGCGCGGCTGGAACACGCCGCTGCTCGTGCAGGGCGACGCAAGCCGCACCGAGTTGC TCGACCGCTTCCGCGCGTACGGCAATGCGATCCTGGTCGGTAGCCAGAGCTTCTGGGAAGGCGTCGACGTGCGTGGCGAT GCGCTGTCGCTGGTCGTGATCGACAAGTTGCCGTTCGCGCCGCCGGACGATCCGGTGCTGGCCGCGCGGCTCGATGCATT GACGAAGAAGGGGCTGAGCCCGTTCGCGGTGCACCAGTTGCCGCAGGCCGTGATCACGCTGAAGCAGGGCGCGGGCCGGC TGATTCGTGCGGAGACGGATCGCGGCGTGCTGATGATCTGCGACACGCGGCTCGTCGACAAGCCGTATGGGCGCCGGATC TGGCAAAGCCTGCCGCCGTTCAAGCGCACGCGCGAGATCGCGGTGGTGCAGGACTTCTTCGACGAGCATCGCTCGGGCAA GCACGCTTGA
Upstream 100 bases:
>100_bases ATCATTTTGCTGCAATCGCAGCTCGAACCGGATAAGCGCGCCTGAGCGCGGCCTGGCAAGCGCCGGCGCCGCCCGGGCGC TGGACACAGGAACGCTTGCC
Downstream 100 bases:
>100_bases TTGCACGCGCGGCGCTTGTCGCTTGATCGTCCCGGTGCCGCTTGCATGCGGCGCCAATAAAAAACCCGGCTCGATGGCCG GGTTTTTTGTGTGCGCACGG
Product: helicase c2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 749; Mature: 749
Protein sequence:
>749_residues MNSPLEATPDARRDTTSAGRVRASEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRTSQIEMARAVASAMEASARRMP EPEIFETRKRPARRLGDADKTTGAAADDAAATESDSDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQ LFQRDIPTVRNALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPENAPVW SMVTSTRDNCLGQECPHYKECFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPNANTIIFDEAHQLPETATLFF GETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAARDLRLAFADGQIVRMSLAQLGDNHPMFGALDALDVALDA LASALASQAERAESLGACLRRARELQDLLAGWVAPGAAEAAAQADAAAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPL SVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYVPRNLPQPSSPAFTDAVFDA ALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGD ALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI WQSLPPFKRTREIAVVQDFFDEHRSGKHA
Sequences:
>Translated_749_residues MNSPLEATPDARRDTTSAGRVRASEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRTSQIEMARAVASAMEASARRMP EPEIFETRKRPARRLGDADKTTGAAADDAAATESDSDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQ LFQRDIPTVRNALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPENAPVW SMVTSTRDNCLGQECPHYKECFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPNANTIIFDEAHQLPETATLFF GETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAARDLRLAFADGQIVRMSLAQLGDNHPMFGALDALDVALDA LASALASQAERAESLGACLRRARELQDLLAGWVAPGAAEAAAQADAAAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPL SVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYVPRNLPQPSSPAFTDAVFDA ALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGD ALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI WQSLPPFKRTREIAVVQDFFDEHRSGKHA >Mature_749_residues MNSPLEATPDARRDTTSAGRVRASEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRTSQIEMARAVASAMEASARRMP EPEIFETRKRPARRLGDADKTTGAAADDAAATESDSDAGDNTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQ LFQRDIPTVRNALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPENAPVW SMVTSTRDNCLGQECPHYKECFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPNANTIIFDEAHQLPETATLFF GETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERAARDLRLAFADGQIVRMSLAQLGDNHPMFGALDALDVALDA LASALASQAERAESLGACLRRARELQDLLAGWVAPGAAEAAAQADAAAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPL SVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLYVPRNLPQPSSPAFTDAVFDA ALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNTPLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGD ALSLVVIDKLPFAPPDDPVLAARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI WQSLPPFKRTREIAVVQDFFDEHRSGKHA
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=706, Percent_Identity=41.3597733711048, Blast_Score=493, Evalue=1e-140, Organism=Escherichia coli, GI1787018, Length=241, Percent_Identity=35.2697095435685, Blast_Score=117, Evalue=3e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 [H]
Pfam domain/function: PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 81476; Mature: 81476
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNSPLEATPDARRDTTSAGRVRASEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRTS CCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCH QIEMARAVASAMEASARRMPEPEIFETRKRPARRLGDADKTTGAAADDAAATESDSDAGD HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC NTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRNALAVPVSVA CEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHH MLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPENAPVW HHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHH SMVTSTRDNCLGQECPHYKECFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHHCCC ANTIIFDEAHQLPETATLFFGETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERA CCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ARDLRLAFADGQIVRMSLAQLGDNHPMFGALDALDVALDALASALASQAERAESLGACLR HHHHEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RARELQDLLAGWVAPGAAEAAAQADAAAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPL HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC SVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLY CHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCEEECCCCCCCCCCEEE VPRNLPQPSSPAFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNT ECCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCC PLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVL CEEEECCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHH AARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHHHHH WQSLPPFKRTREIAVVQDFFDEHRSGKHA HHHCCCHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNSPLEATPDARRDTTSAGRVRASEGTFELSRKRVDELDTIFGEGGLLARALDGYRPRTS CCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCH QIEMARAVASAMEASARRMPEPEIFETRKRPARRLGDADKTTGAAADDAAATESDSDAGD HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC NTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQRDIPTVRNALAVPVSVA CEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHH MLKGRANYLCHYYLQRTADNGRLPSRQDTAYLQEIVRFAKITKSGDKAELASVPENAPVW HHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHH SMVTSTRDNCLGQECPHYKECFVMQARREAQQADIVVVNHHLFFADIMLRDTGMAELLPN HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEECHHEEHHHHHHCCCHHHHCCC ANTIIFDEAHQLPETATLFFGETLSTTQILELARDTVAEGLSHARDAVEWVKLGGDLERA CCEEEECCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH ARDLRLAFADGQIVRMSLAQLGDNHPMFGALDALDVALDALASALASQAERAESLGACLR HHHHEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RARELQDLLAGWVAPGAAEAAAQADAAAAGDKAASDGDPNEKVRWVEVFAHTVQLHETPL HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC SVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGLSSRRSMTLASPFDYQSQGLLY CHHHHHHHHHCCCCEEEEEEEEEEEECCCHHHHHHHHCCCCCCCEEECCCCCCCCCCEEE VPRNLPQPSSPAFTDAVFDAALPAIEASGGGVFMLCTTLRAVDRIASKLRDVIESRGWNT ECCCCCCCCCCCHHHHHHHHHHCCEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCC PLLVQGDASRTELLDRFRAYGNAILVGSQSFWEGVDVRGDALSLVVIDKLPFAPPDDPVL CEEEECCCHHHHHHHHHHHCCCEEEEECHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHH AARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDRGVLMICDTRLVDKPYGRRI HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHCCCHHHHH WQSLPPFKRTREIAVVQDFFDEHRSGKHA HHHCCCHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]