Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689788
Identifier: 116689788
GI number: 116689788
Start: 1963782
End: 1964660
Strand: Reverse
Name: 116689788
Synonym: Bcen2424_1767
Alternate gene names: NA
Gene position: 1964660-1963782 (Counterclockwise)
Preceding gene: 116689789
Following gene: 116689787
Centisome position: 56.39
GC content: 64.85
Gene sequence:
>879_bases GTGAGTGCGAATCCGAACGAGATCCCGAATCCGCCGCCGCCCGGCGAGCGGCAGCACGTGTTTCCGCCGCCGCTGGATCG CGATTACCGCGTCGAGGACGGGCGCATCCAGACGCGCTCGCTGGAAGCGCATATCGTCGATCACTGCAATCTGACCTGCG CGGAATGCTGCTCGCTGTCGCCGCTGTTGCCCGAGTGGCATGCGAGCCCCGAATCGATCGAAGCCGATCTGCGCAAGGCC GCGAAAGTGTTGCGCCCGCGCATGTTCAAGCTGGTCGGTGGCGAACCGTTGCTGCATCCGGCGCTCGTTGAAATGATCGA GCGCGTACGCGCGACCGGCATCGCACCCGTGATCTCGGTCACGACGAACGGCCTGAAACTCGGCGAGATGCCCGACGCGT TCTGGCAAGCGGTGGATGCGCTGACGATCTCGCGCTATCCGAAGCCGGCGCTTTCCGCCGACCTGGTCGCGCATGTCGAG CGCCAGGCGGCGCGCTTCGACGTGCGTCTGAACTGGAAGGTGCAGGACGTGTTCACGACGATGAACCGCGCCCAGCCCGG CACGGATCGCGACGAAGCCCGGCGCCTGTATCACGATTGCTGGATTCGCGAGCGCTGCCATATGATTCGCGACGGCATGT TCTACACGTGCACGCGTCCCGCGCATTTCCATACGCTGTACAAGGGCGACAAGGATTTTCAGGCCGACGGCCTGCCGCTG CGCGACGACGCGGGCATGCTCGACGCGATGCTCGCCTATCTGCAACGCGAGACGCCGCTCGAAGCGTGCCTGCATTGCCA GGGCGGCAGCGCGCCGGTGGCGCCCCATCGCATTCTCAAACGCATTGAAGTGGACACCTTGAAGGCTCGTTATCCATGA
Upstream 100 bases:
>100_bases TCGCATCTGAACGGTGCGGTGACGATGGCGTCCGCGATGGTGAACGCGCGTGACCGTCTAATAGATTTCTTTTCCCGCTG CGTGGAAACAGGAAGCTGAT
Downstream 100 bases:
>100_bases TCGTCGGTACGCGCGACCCGTTCGGTTTCGATCGTCTGCACTACCATCCGCGCAGCGGCGTGTCGGCGTCCGGTATCCGC GCGGTATTGGGGGCGTCGGG
Product: hypothetical protein
Products: NA
Alternate protein names: Radical SAM Domain-Containing Protein
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MSANPNEIPNPPPPGERQHVFPPPLDRDYRVEDGRIQTRSLEAHIVDHCNLTCAECCSLSPLLPEWHASPESIEADLRKA AKVLRPRMFKLVGGEPLLHPALVEMIERVRATGIAPVISVTTNGLKLGEMPDAFWQAVDALTISRYPKPALSADLVAHVE RQAARFDVRLNWKVQDVFTTMNRAQPGTDRDEARRLYHDCWIRERCHMIRDGMFYTCTRPAHFHTLYKGDKDFQADGLPL RDDAGMLDAMLAYLQRETPLEACLHCQGGSAPVAPHRILKRIEVDTLKARYP
Sequences:
>Translated_292_residues MSANPNEIPNPPPPGERQHVFPPPLDRDYRVEDGRIQTRSLEAHIVDHCNLTCAECCSLSPLLPEWHASPESIEADLRKA AKVLRPRMFKLVGGEPLLHPALVEMIERVRATGIAPVISVTTNGLKLGEMPDAFWQAVDALTISRYPKPALSADLVAHVE RQAARFDVRLNWKVQDVFTTMNRAQPGTDRDEARRLYHDCWIRERCHMIRDGMFYTCTRPAHFHTLYKGDKDFQADGLPL RDDAGMLDAMLAYLQRETPLEACLHCQGGSAPVAPHRILKRIEVDTLKARYP >Mature_291_residues SANPNEIPNPPPPGERQHVFPPPLDRDYRVEDGRIQTRSLEAHIVDHCNLTCAECCSLSPLLPEWHASPESIEADLRKAA KVLRPRMFKLVGGEPLLHPALVEMIERVRATGIAPVISVTTNGLKLGEMPDAFWQAVDALTISRYPKPALSADLVAHVER QAARFDVRLNWKVQDVFTTMNRAQPGTDRDEARRLYHDCWIRERCHMIRDGMFYTCTRPAHFHTLYKGDKDFQADGLPLR DDAGMLDAMLAYLQRETPLEACLHCQGGSAPVAPHRILKRIEVDTLKARYP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33025; Mature: 32894
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSANPNEIPNPPPPGERQHVFPPPLDRDYRVEDGRIQTRSLEAHIVDHCNLTCAECCSLS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHCCCC PLLPEWHASPESIEADLRKAAKVLRPRMFKLVGGEPLLHPALVEMIERVRATGIAPVISV CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEE TTNGLKLGEMPDAFWQAVDALTISRYPKPALSADLVAHVERQAARFDVRLNWKVQDVFTT ECCCEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEEEHHHHHHH MNRAQPGTDRDEARRLYHDCWIRERCHMIRDGMFYTCTRPAHFHTLYKGDKDFQADGLPL HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCCCCCCCC RDDAGMLDAMLAYLQRETPLEACLHCQGGSAPVAPHRILKRIEVDTLKARYP CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SANPNEIPNPPPPGERQHVFPPPLDRDYRVEDGRIQTRSLEAHIVDHCNLTCAECCSLS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCHHHHCCCC PLLPEWHASPESIEADLRKAAKVLRPRMFKLVGGEPLLHPALVEMIERVRATGIAPVISV CCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEE TTNGLKLGEMPDAFWQAVDALTISRYPKPALSADLVAHVERQAARFDVRLNWKVQDVFTT ECCCEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEEEEHHHHHHH MNRAQPGTDRDEARRLYHDCWIRERCHMIRDGMFYTCTRPAHFHTLYKGDKDFQADGLPL HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHCCCCCCCCCCCCC RDDAGMLDAMLAYLQRETPLEACLHCQGGSAPVAPHRILKRIEVDTLKARYP CCCCHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA