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The map label for this gene is nodB [H]

Identifier: 116689783

GI number: 116689783

Start: 1959272

End: 1959868

Strand: Direct

Name: nodB [H]

Synonym: Bcen2424_1762

Alternate gene names: 116689783

Gene position: 1959272-1959868 (Clockwise)

Preceding gene: 116689782

Following gene: 116689785

Centisome position: 56.24

GC content: 69.51

Gene sequence:

>597_bases
ATGATCTCCATTCACCTCAGTTTCGACGACGGCCCCGGCCCCTCGACGCCTGCGCTGCTCGACGTGCTGCACGACGCATC
CTGCACGGCGACCTTCTTCGTGCTCGGCAAGCATCTCGCGGGCGCGCTCGACGTCGCAACGAGAATCGCGCGCGACGGCC
ACCGGCTCGGCAATCACACCTATTCGCACGCGAAGCCCGGCGCGCTCGCCAACGCCGCACTCATCGACGAGATCGACACG
ACCGACGCGCTGATTCGCGACGTCTACCGCCGCGCCGGCTTTCCCGCACCGAACGCGATCCCGCTGCGCCTTCCATACGG
GTTGATGCCGCAGGACGATCGCGCAGCCGTGCTCGCGCGCGCACAACGCGAACACACGGGCTGGACCGCGATCCTGGACG
ACTGGCAGCGGCCGGCGCCGTCGCCGCAGGCGCTGTTCGACGCGATGTGCGCGCATGCCGATGCCTGCGCGGCGCAGCAT
CGCGACGTGCTGTTCTGCCTGCACGACGGATCACGGCACGGCGACACGCGGCCCAACACGGTCGAAGCGGTGCGGCTGTT
CCTGAACCGGCAGCGCGCTGCCGCCATGCCCCGTTAG

Upstream 100 bases:

>100_bases
GCGGCCCGGTTCTTCTACGAATGGACCGGCACCGGGCTGCGTCCGGTCGGCAGATGCCCGCTGGCCATCGAGCCGGTTCA
GTGAGCGGCCCGGGCGACCG

Downstream 100 bases:

>100_bases
CCCGCGGGCACCGCCCCATCCAGCAACTGGCGCCAGCCGCCGAGGAATCCGATACCGGGCCCCGGCATCCACAGCCCGCG
CTGCGCCGCTTCGAGATGGA

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MISIHLSFDDGPGPSTPALLDVLHDASCTATFFVLGKHLAGALDVATRIARDGHRLGNHTYSHAKPGALANAALIDEIDT
TDALIRDVYRRAGFPAPNAIPLRLPYGLMPQDDRAAVLARAQREHTGWTAILDDWQRPAPSPQALFDAMCAHADACAAQH
RDVLFCLHDGSRHGDTRPNTVEAVRLFLNRQRAAAMPR

Sequences:

>Translated_198_residues
MISIHLSFDDGPGPSTPALLDVLHDASCTATFFVLGKHLAGALDVATRIARDGHRLGNHTYSHAKPGALANAALIDEIDT
TDALIRDVYRRAGFPAPNAIPLRLPYGLMPQDDRAAVLARAQREHTGWTAILDDWQRPAPSPQALFDAMCAHADACAAQH
RDVLFCLHDGSRHGDTRPNTVEAVRLFLNRQRAAAMPR
>Mature_198_residues
MISIHLSFDDGPGPSTPALLDVLHDASCTATFFVLGKHLAGALDVATRIARDGHRLGNHTYSHAKPGALANAALIDEIDT
TDALIRDVYRRAGFPAPNAIPLRLPYGLMPQDDRAAVLARAQREHTGWTAILDDWQRPAPSPQALFDAMCAHADACAAQH
RDVLFCLHDGSRHGDTRPNTVEAVRLFLNRQRAAAMPR

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 21524; Mature: 21524

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIHLSFDDGPGPSTPALLDVLHDASCTATFFVLGKHLAGALDVATRIARDGHRLGNHT
CEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
YSHAKPGALANAALIDEIDTTDALIRDVYRRAGFPAPNAIPLRLPYGLMPQDDRAAVLAR
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHH
AQREHTGWTAILDDWQRPAPSPQALFDAMCAHADACAAQHRDVLFCLHDGSRHGDTRPNT
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
VEAVRLFLNRQRAAAMPR
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MISIHLSFDDGPGPSTPALLDVLHDASCTATFFVLGKHLAGALDVATRIARDGHRLGNHT
CEEEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
YSHAKPGALANAALIDEIDTTDALIRDVYRRAGFPAPNAIPLRLPYGLMPQDDRAAVLAR
CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHHH
AQREHTGWTAILDDWQRPAPSPQALFDAMCAHADACAAQHRDVLFCLHDGSRHGDTRPNT
HHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
VEAVRLFLNRQRAAAMPR
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3960737 [H]