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The map label for this gene is yhcD [H]

Identifier: 116689776

GI number: 116689776

Start: 1951109

End: 1953601

Strand: Direct

Name: yhcD [H]

Synonym: Bcen2424_1755

Alternate gene names: 116689776

Gene position: 1951109-1953601 (Clockwise)

Preceding gene: 116689775

Following gene: 116689780

Centisome position: 56.0

GC content: 71.12

Gene sequence:

>2493_bases
ATGCGGCCTCGCACCAGTAGACTGCGCGGCGCCGATTGCGGGCCGTCAATGTCACGCACCGCTCATCGCCGGAACGCACT
GCTCGCGCTCGGGCTGTACGTCGGCGCGGGCAGCACGCCGTGCGCCGCGCCGGCCGCCCCCGGACACCCGTCGACGGACG
CGCTCGAATTCGACGCTGGCGCGCTGCGCGAGCACGGTATCGACGCAACGACCAGCCGCTATTTCGCGCACGCGCCGCGC
TTCATGCCGGGCCTCTCAGCCGTCCGGCTGACGGTCAACGGCCGGCGCGCCGGTCGTGCCGATGCGCGATTCGACACCGA
CGGCAACCTGTGCGTCACGCCCGAACTGTTGCGTGCAGCCGGCCTCGTCGCGCCCGACACGTTCCGCGACACGACCACCT
GCCATGACTACCGGCATGCGTATCCGCAGGCGATCGTCACGTTGCGCCCGGCCGACGGCGCGATCGATTTCGTCGTGCCG
GCCGACGCGCTCGACACGCGGCCGCGCACAGCGGATACGTTCGAACGCGGCGGTCTCGCCGGCCTGATCAACTACGACGT
ACTCGCGATGACGACACGCAATCCGGCCGGTACGTCGCAGTACTGGCAAGCCGCGACCGAGGCCGGATTCAATGCGTCGG
ACTGGGTCGTGCGCATCAGCCAGATCGTCACGTCGGTGGACGGCCGCGTGGGTGTCGAGCATCAGGCGGCCTACGCGCAG
CGCACGTTCGCCGCGCGCAGCACGACGCTGCAGGCCGGGCAGATCGTTCCGCAATCGACGCTGTTCACGGTGGGCCGGAT
GTTCGGCGTGCAGACGTTTCCCGACGAAGCGCTGGCGGCCGCGCCCGGCACCGCTGCCCGGGTAACCGGAATCGCCCGGA
CGCAGGCACGCGTGGAGGTACGCCAGCTCGGCGTACTGATCCACGCGTCACAGGTGCCGCCCGGCCCGTTTTCGCTGGGT
GACCTGCCGCTCGTCAGCGGCACCGCGGATCTCGACGTGACAGTGGTCGAGGCAACCGGCGGCGTTCAGCACTTCGTCGT
GCCGGGCGCGTCGCTGCCCGGCGCCGGGCTCGCGGCGGCGCAAGGGCTGGCGATCGCCGTCGGCCGCCTGCAGAACGACG
GATACGCGCAAGCGCCGTGGCTCGCGACCGCCACGCGCGGCTGGCAGATCCGTCAGCGTGCGCGGCTGAGCGCCGGCATC
CTGGTGTCGTCGCCGTTGCAGTCGGGCGCCGCGCGCGTCGAATTCGCGCCGCTTGCCGAGCTCGGTGCGGCCGTCGGCAT
CGACGTCAGCCGCACCGCCGCCCGACGCGGCACCCAGGCCCGCATCGCGTTGGCGAACACGCTCGACACGGCGCTGCGCG
CCAGTCTGTCGTTCGTGCGACGCACACCCGGATACCGGGAACTGACCGACGCCGTCCGGTCGCTGGACGCCTTCACGGCG
CCCTCGCATACCCAGTTCGCGACCACACTTGGCTGGCACGATCGCGTGCTCGGCGCGCTGTCGTTCGACTACACGCGCGT
CGGGCTGTTCGACGGCTCCGCGCGGCAGCGCGTGTCCGGTACGTGGACGCGCCCGTTCGGACGCGCATCGGTCTCGCTGA
ACGTGAACCGCACGCTCGGCGGCCGCGGCGCGGGCGGCACCCAGGTCTACGTGAACATGAGCGTGCCGATCGGCCGTCGC
CATGTCAGCACCTATGCGAACCTCGACGGCAATACGGTGCGCTCCGGCGCACGCTACGCCGACACGTTCGGTCGCACCGG
CCACTACAGCGTCGCGGCCGATTACGACACCGCGAGCCGGTCGCCGTCGATCCGCGCGAGCGTCAGCGCGACGCCGAACC
ATGCGCGCGCGACCGTCAACGCGGGCGTGTTCGGCGCCGGCCGCTCGATGCTCAGCGTCAATCTGCGCGGCGCACTCGCG
TGGATCGATGGCGCCGGCATGCTGTCGCCGTATGCGATTCGCGACACGTTCGCACTCGCGCGCGTCGGCGAACAGCCGGG
TATCGAACTCGCGACGCCGTCCGGCCCGGTCTGGACCGACCGGCGCGGCCGGGCCGTCATCGCGTCGCTGCCCGCATACG
CGCAAACCTTCATCCGGATCAGGACGAAAGACCTGCCGCGCAATATCGATCTGAAGAACGGCATGCAGACCGTCGAAGCG
GGGCGCGGCTCGGTGAGTCGTGTCGAATTCGCCGTCGAGACGACGCGGCGCGTGTTGCTGACCGTGACGCAAGCGAACGG
CGCGGCGCTGCCGGTACTGTCGACCGTCATCGACGACGACGACCGGTTCGTGACCGTATCCGCGAGCGAAGGCAAGCTGC
TGCTCGCGGGCGCGCAGTTGAGCATGCCGCTGCGCGTCGTGCTGCCGGACGGCCGGCACTGCCGGCTGACGATCGCACTG
CCGGACCGGCCGCCCGTCACGACGCGCTACTACGAGCGGGCCGACGCACGGTGCGAGCCGGTGCCCGACACCGCCCGCGA
CGCCCGCACATAA

Upstream 100 bases:

>100_bases
GAGCGTCCCGCGACGCTCGAACAGGTACGGATCTTCCCGGCCACCGTCTACGGCTACTCGGTCGATCACTACGACGCGGC
GCTCGCGCCCCGTGCGGCCG

Downstream 100 bases:

>100_bases
ATGCGCATAAAAAAAGCGGCATGCAGACCGCCATGCCGCCAACCCCAACTCTGTTCTTGCTCCGTCGCGCCTAGAACTTC
ATCCCGACGCCCACGCCGAC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 830; Mature: 830

Protein sequence:

>830_residues
MRPRTSRLRGADCGPSMSRTAHRRNALLALGLYVGAGSTPCAAPAAPGHPSTDALEFDAGALREHGIDATTSRYFAHAPR
FMPGLSAVRLTVNGRRAGRADARFDTDGNLCVTPELLRAAGLVAPDTFRDTTTCHDYRHAYPQAIVTLRPADGAIDFVVP
ADALDTRPRTADTFERGGLAGLINYDVLAMTTRNPAGTSQYWQAATEAGFNASDWVVRISQIVTSVDGRVGVEHQAAYAQ
RTFAARSTTLQAGQIVPQSTLFTVGRMFGVQTFPDEALAAAPGTAARVTGIARTQARVEVRQLGVLIHASQVPPGPFSLG
DLPLVSGTADLDVTVVEATGGVQHFVVPGASLPGAGLAAAQGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLSAGI
LVSSPLQSGAARVEFAPLAELGAAVGIDVSRTAARRGTQARIALANTLDTALRASLSFVRRTPGYRELTDAVRSLDAFTA
PSHTQFATTLGWHDRVLGALSFDYTRVGLFDGSARQRVSGTWTRPFGRASVSLNVNRTLGGRGAGGTQVYVNMSVPIGRR
HVSTYANLDGNTVRSGARYADTFGRTGHYSVAADYDTASRSPSIRASVSATPNHARATVNAGVFGAGRSMLSVNLRGALA
WIDGAGMLSPYAIRDTFALARVGEQPGIELATPSGPVWTDRRGRAVIASLPAYAQTFIRIRTKDLPRNIDLKNGMQTVEA
GRGSVSRVEFAVETTRRVLLTVTQANGAALPVLSTVIDDDDRFVTVSASEGKLLLAGAQLSMPLRVVLPDGRHCRLTIAL
PDRPPVTTRYYERADARCEPVPDTARDART

Sequences:

>Translated_830_residues
MRPRTSRLRGADCGPSMSRTAHRRNALLALGLYVGAGSTPCAAPAAPGHPSTDALEFDAGALREHGIDATTSRYFAHAPR
FMPGLSAVRLTVNGRRAGRADARFDTDGNLCVTPELLRAAGLVAPDTFRDTTTCHDYRHAYPQAIVTLRPADGAIDFVVP
ADALDTRPRTADTFERGGLAGLINYDVLAMTTRNPAGTSQYWQAATEAGFNASDWVVRISQIVTSVDGRVGVEHQAAYAQ
RTFAARSTTLQAGQIVPQSTLFTVGRMFGVQTFPDEALAAAPGTAARVTGIARTQARVEVRQLGVLIHASQVPPGPFSLG
DLPLVSGTADLDVTVVEATGGVQHFVVPGASLPGAGLAAAQGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLSAGI
LVSSPLQSGAARVEFAPLAELGAAVGIDVSRTAARRGTQARIALANTLDTALRASLSFVRRTPGYRELTDAVRSLDAFTA
PSHTQFATTLGWHDRVLGALSFDYTRVGLFDGSARQRVSGTWTRPFGRASVSLNVNRTLGGRGAGGTQVYVNMSVPIGRR
HVSTYANLDGNTVRSGARYADTFGRTGHYSVAADYDTASRSPSIRASVSATPNHARATVNAGVFGAGRSMLSVNLRGALA
WIDGAGMLSPYAIRDTFALARVGEQPGIELATPSGPVWTDRRGRAVIASLPAYAQTFIRIRTKDLPRNIDLKNGMQTVEA
GRGSVSRVEFAVETTRRVLLTVTQANGAALPVLSTVIDDDDRFVTVSASEGKLLLAGAQLSMPLRVVLPDGRHCRLTIAL
PDRPPVTTRYYERADARCEPVPDTARDART
>Mature_830_residues
MRPRTSRLRGADCGPSMSRTAHRRNALLALGLYVGAGSTPCAAPAAPGHPSTDALEFDAGALREHGIDATTSRYFAHAPR
FMPGLSAVRLTVNGRRAGRADARFDTDGNLCVTPELLRAAGLVAPDTFRDTTTCHDYRHAYPQAIVTLRPADGAIDFVVP
ADALDTRPRTADTFERGGLAGLINYDVLAMTTRNPAGTSQYWQAATEAGFNASDWVVRISQIVTSVDGRVGVEHQAAYAQ
RTFAARSTTLQAGQIVPQSTLFTVGRMFGVQTFPDEALAAAPGTAARVTGIARTQARVEVRQLGVLIHASQVPPGPFSLG
DLPLVSGTADLDVTVVEATGGVQHFVVPGASLPGAGLAAAQGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLSAGI
LVSSPLQSGAARVEFAPLAELGAAVGIDVSRTAARRGTQARIALANTLDTALRASLSFVRRTPGYRELTDAVRSLDAFTA
PSHTQFATTLGWHDRVLGALSFDYTRVGLFDGSARQRVSGTWTRPFGRASVSLNVNRTLGGRGAGGTQVYVNMSVPIGRR
HVSTYANLDGNTVRSGARYADTFGRTGHYSVAADYDTASRSPSIRASVSATPNHARATVNAGVFGAGRSMLSVNLRGALA
WIDGAGMLSPYAIRDTFALARVGEQPGIELATPSGPVWTDRRGRAVIASLPAYAQTFIRIRTKDLPRNIDLKNGMQTVEA
GRGSVSRVEFAVETTRRVLLTVTQANGAALPVLSTVIDDDDRFVTVSASEGKLLLAGAQLSMPLRVVLPDGRHCRLTIAL
PDRPPVTTRYYERADARCEPVPDTARDART

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789610, Length=775, Percent_Identity=31.3548387096774, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1789533, Length=807, Percent_Identity=23.0483271375465, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1788427, Length=301, Percent_Identity=26.9102990033223, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI1786332, Length=836, Percent_Identity=22.2488038277512, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1790772, Length=300, Percent_Identity=26.3333333333333, Blast_Score=84, Evalue=5e-17,
Organism=Escherichia coli, GI87081778, Length=418, Percent_Identity=24.6411483253589, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1786744, Length=320, Percent_Identity=25.625, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI1787172, Length=399, Percent_Identity=24.812030075188, Blast_Score=69, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 88018; Mature: 88018

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPRTSRLRGADCGPSMSRTAHRRNALLALGLYVGAGSTPCAAPAAPGHPSTDALEFDAG
CCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCH
ALREHGIDATTSRYFAHAPRFMPGLSAVRLTVNGRRAGRADARFDTDGNLCVTPELLRAA
HHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCCEEECHHHHHHC
GLVAPDTFRDTTTCHDYRHAYPQAIVTLRPADGAIDFVVPADALDTRPRTADTFERGGLA
CCCCCCCCCCCCCHHHHHHHCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHCCEE
GLINYDVLAMTTRNPAGTSQYWQAATEAGFNASDWVVRISQIVTSVDGRVGVEHQAAYAQ
EEECCEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RTFAARSTTLQAGQIVPQSTLFTVGRMFGVQTFPDEALAAAPGTAARVTGIARTQARVEV
HHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
RQLGVLIHASQVPPGPFSLGDLPLVSGTADLDVTVVEATGGVQHFVVPGASLPGAGLAAA
HHHEEEEEECCCCCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHH
QGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLSAGILVSSPLQSGAARVEFAPLAE
CCEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCEEEECCHHH
LGAAVGIDVSRTAARRGTQARIALANTLDTALRASLSFVRRTPGYRELTDAVRSLDAFTA
HHHHHCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PSHTQFATTLGWHDRVLGALSFDYTRVGLFDGSARQRVSGTWTRPFGRASVSLNVNRTLG
CCCCCCEECCCHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECC
GRGAGGTQVYVNMSVPIGRRHVSTYANLDGNTVRSGARYADTFGRTGHYSVAADYDTASR
CCCCCCCEEEEEEECCCCCHHHHHEECCCCCHHCCCCHHHHHCCCCCCEEEEECCCCCCC
SPSIRASVSATPNHARATVNAGVFGAGRSMLSVNLRGALAWIDGAGMLSPYAIRDTFALA
CCCEEEEEECCCCCCEEEEECCEEECCCEEEEEEECEEEEEECCCCCCCCHHHHHHHHHH
RVGEQPGIELATPSGPVWTDRRGRAVIASLPAYAQTFIRIRTKDLPRNIDLKNGMQTVEA
HCCCCCCEEEECCCCCEEECCCCCEEEEECCHHHHHEEEEEECCCCCCCCHHCCHHHHHC
GRGSVSRVEFAVETTRRVLLTVTQANGAALPVLSTVIDDDDRFVTVSASEGKLLLAGAQL
CCCCCCEEEEHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEECCCC
SMPLRVVLPDGRHCRLTIALPDRPPVTTRYYERADARCEPVPDTARDART
CCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MRPRTSRLRGADCGPSMSRTAHRRNALLALGLYVGAGSTPCAAPAAPGHPSTDALEFDAG
CCCCCCCCCCCCCCCCHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCH
ALREHGIDATTSRYFAHAPRFMPGLSAVRLTVNGRRAGRADARFDTDGNLCVTPELLRAA
HHHHCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEECCCCCEEECHHHHHHC
GLVAPDTFRDTTTCHDYRHAYPQAIVTLRPADGAIDFVVPADALDTRPRTADTFERGGLA
CCCCCCCCCCCCCHHHHHHHCCEEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHCCEE
GLINYDVLAMTTRNPAGTSQYWQAATEAGFNASDWVVRISQIVTSVDGRVGVEHQAAYAQ
EEECCEEEEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RTFAARSTTLQAGQIVPQSTLFTVGRMFGVQTFPDEALAAAPGTAARVTGIARTQARVEV
HHHHHHHCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH
RQLGVLIHASQVPPGPFSLGDLPLVSGTADLDVTVVEATGGVQHFVVPGASLPGAGLAAA
HHHEEEEEECCCCCCCCCCCCCCEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCHHHH
QGLAIAVGRLQNDGYAQAPWLATATRGWQIRQRARLSAGILVSSPLQSGAARVEFAPLAE
CCEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCCEEEECCHHH
LGAAVGIDVSRTAARRGTQARIALANTLDTALRASLSFVRRTPGYRELTDAVRSLDAFTA
HHHHHCCCCHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
PSHTQFATTLGWHDRVLGALSFDYTRVGLFDGSARQRVSGTWTRPFGRASVSLNVNRTLG
CCCCCCEECCCHHHHHHHHEECCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECC
GRGAGGTQVYVNMSVPIGRRHVSTYANLDGNTVRSGARYADTFGRTGHYSVAADYDTASR
CCCCCCCEEEEEEECCCCCHHHHHEECCCCCHHCCCCHHHHHCCCCCCEEEEECCCCCCC
SPSIRASVSATPNHARATVNAGVFGAGRSMLSVNLRGALAWIDGAGMLSPYAIRDTFALA
CCCEEEEEECCCCCCEEEEECCEEECCCEEEEEEECEEEEEECCCCCCCCHHHHHHHHHH
RVGEQPGIELATPSGPVWTDRRGRAVIASLPAYAQTFIRIRTKDLPRNIDLKNGMQTVEA
HCCCCCCEEEECCCCCEEECCCCCEEEEECCHHHHHEEEEEECCCCCCCCHHCCHHHHHC
GRGSVSRVEFAVETTRRVLLTVTQANGAALPVLSTVIDDDDRFVTVSASEGKLLLAGAQL
CCCCCCEEEEHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCEEEEECCCC
SMPLRVVLPDGRHCRLTIALPDRPPVTTRYYERADARCEPVPDTARDART
CCCEEEEECCCCEEEEEEEECCCCCCCHHHHHHCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]