Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
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Accession | NC_008542 |
Length | 3,483,902 |
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The map label for this gene is 116689755
Identifier: 116689755
GI number: 116689755
Start: 1925743
End: 1926585
Strand: Reverse
Name: 116689755
Synonym: Bcen2424_1734
Alternate gene names: NA
Gene position: 1926585-1925743 (Counterclockwise)
Preceding gene: 116689756
Following gene: 116689754
Centisome position: 55.3
GC content: 69.99
Gene sequence:
>843_bases ATGGCGTGGGTCCGAAGCGAAGCGCACCATCCGTCTCAAGCAAATGGAACCGGTTCCATTCCGGTGAAAAAGGGCAACAT GGCAGACATCGTGATCGTGGCGAGCGCATTCGGGATGGATCGGGTGCGCCAGGAGGGCCACAGTGCATTCATCGCGACCG TGGCGGCATCCGGCGCGGCCGGTTTCGAGGTGCGGCGCGAACTGTTCGCGTCGGACGACGATACGGCGCCCGGCGCGCTG GCCGCGCTCGGCGCGCAGATCGCCGGCCACGGACTGTGGTCGGTCTATTCGACCCCCGACTCGCTGTATACCCAAACGGG TGCGCTCGACGTCGACGCCTTGCGCGACGCACTCGCGCAAGCCGACGCACTCGGCGCGCGCTTCGTGAAATTCCAGCTCG GCGGCTTTGCCGGCGACGCGCATGCGGCCGAGATCGTCGCGCTGTCGCGCGGGGCGCGGGCTCGCGTGGTGGTCGAAAAC GGCCAGCCCGAGATCGGCGGCGCGTTCGTGCAGTTCCGCGGGCTGTTCGACGCGCTCGCCGATGCCGGCCTGCCCGATGC GCTCGGCATGACGTTCGACATCGGCAACTGGCAGTGGCGCGGCGAAGCGCCGCTCGACTGCGCGCAGGTGCTCGCGCCGC ACGTGGAATACATTCATTGCAAGACCATCGAAGGCGAGGGCGCGCGTCGTTTCGCCGTCGCGCCGGCGCCGAACGATCCG CTCGTGACCGGTGTGCTCGCGGCGCTGCCGCAGCACGCGCCGCGCGGCATCGAGTTCCCGTTCGACGCGGCCGACCTGGC GGGCGACGCCTGCCGGCGGGTCGCATGGCTCGCGACCGCGTGA
Upstream 100 bases:
>100_bases GCGCAGGACCTCGCATAGGCGCCGACACCGTGCCGGGAACGCGCGTTGCGCGCTGGCGGACGCGTATTCACGGGACAACC GAGCCTTAGGGATTTCCTCT
Downstream 100 bases:
>100_bases CCACGTGACCGCAGCAGGATTCTGAGGAGTTCAGTCATGAAAGCAGCACTCGATGTCGTGACCTACGGCGAAGCGATGGC GATGTTCGTCGCGACGGAGC
Product: xylose isomerase domain-containing protein
Products: NA
Alternate protein names: Xylose Isomerase Domain Protein TIM Barrel; Epimerase; Epimerase KguE; Xylose Isomerase Domain-Containing Protein TIM Barrel; Xylose Isomerase-Like TIM Barrel; Sugar Isomerase; Epimerase KguE-Like; Sugar Phosphate Isomerase/Epimerase; Sugar Or Sugar Phosphate Isomerase; Sugar Phosphate Isomerases/Epimerase
Number of amino acids: Translated: 280; Mature: 279
Protein sequence:
>280_residues MAWVRSEAHHPSQANGTGSIPVKKGNMADIVIVASAFGMDRVRQEGHSAFIATVAASGAAGFEVRRELFASDDDTAPGAL AALGAQIAGHGLWSVYSTPDSLYTQTGALDVDALRDALAQADALGARFVKFQLGGFAGDAHAAEIVALSRGARARVVVEN GQPEIGGAFVQFRGLFDALADAGLPDALGMTFDIGNWQWRGEAPLDCAQVLAPHVEYIHCKTIEGEGARRFAVAPAPNDP LVTGVLAALPQHAPRGIEFPFDAADLAGDACRRVAWLATA
Sequences:
>Translated_280_residues MAWVRSEAHHPSQANGTGSIPVKKGNMADIVIVASAFGMDRVRQEGHSAFIATVAASGAAGFEVRRELFASDDDTAPGAL AALGAQIAGHGLWSVYSTPDSLYTQTGALDVDALRDALAQADALGARFVKFQLGGFAGDAHAAEIVALSRGARARVVVEN GQPEIGGAFVQFRGLFDALADAGLPDALGMTFDIGNWQWRGEAPLDCAQVLAPHVEYIHCKTIEGEGARRFAVAPAPNDP LVTGVLAALPQHAPRGIEFPFDAADLAGDACRRVAWLATA >Mature_279_residues AWVRSEAHHPSQANGTGSIPVKKGNMADIVIVASAFGMDRVRQEGHSAFIATVAASGAAGFEVRRELFASDDDTAPGALA ALGAQIAGHGLWSVYSTPDSLYTQTGALDVDALRDALAQADALGARFVKFQLGGFAGDAHAAEIVALSRGARARVVVENG QPEIGGAFVQFRGLFDALADAGLPDALGMTFDIGNWQWRGEAPLDCAQVLAPHVEYIHCKTIEGEGARRFAVAPAPNDPL VTGVLAALPQHAPRGIEFPFDAADLAGDACRRVAWLATA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29195; Mature: 29064
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWVRSEAHHPSQANGTGSIPVKKGNMADIVIVASAFGMDRVRQEGHSAFIATVAASGAA CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEHHCHHHHHHCCCCEEEEEEECCCCC GFEVRRELFASDDDTAPGALAALGAQIAGHGLWSVYSTPDSLYTQTGALDVDALRDALAQ HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHH ADALGARFVKFQLGGFAGDAHAAEIVALSRGARARVVVENGQPEIGGAFVQFRGLFDALA HHHHHHEEEEEEECCCCCCCHHHHHEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH DAGLPDALGMTFDIGNWQWRGEAPLDCAQVLAPHVEYIHCKTIEGEGARRFAVAPAPNDP HCCCCCCCCCEEECCCEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCH LVTGVLAALPQHAPRGIEFPFDAADLAGDACRRVAWLATA HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEECC >Mature Secondary Structure AWVRSEAHHPSQANGTGSIPVKKGNMADIVIVASAFGMDRVRQEGHSAFIATVAASGAA CCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEEHHCHHHHHHCCCCEEEEEEECCCCC GFEVRRELFASDDDTAPGALAALGAQIAGHGLWSVYSTPDSLYTQTGALDVDALRDALAQ HHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCHHHHHHHHHH ADALGARFVKFQLGGFAGDAHAAEIVALSRGARARVVVENGQPEIGGAFVQFRGLFDALA HHHHHHEEEEEEECCCCCCCHHHHHEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHHH DAGLPDALGMTFDIGNWQWRGEAPLDCAQVLAPHVEYIHCKTIEGEGARRFAVAPAPNDP HCCCCCCCCCEEECCCEEECCCCCHHHHHHHHCCCEEEEEEEECCCCCEEEEECCCCCCH LVTGVLAALPQHAPRGIEFPFDAADLAGDACRRVAWLATA HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA