Click here to switch to the map view.

The map label for this gene is kdgR [H]

Identifier: 116689750

GI number: 116689750

Start: 1920972

End: 1922015

Strand: Reverse

Name: kdgR [H]

Synonym: Bcen2424_1729

Alternate gene names: 116689750

Gene position: 1922015-1920972 (Counterclockwise)

Preceding gene: 116689751

Following gene: 116689749

Centisome position: 55.17

GC content: 70.69

Gene sequence:

>1044_bases
GTGACCGATACGCAACCTTCCACGACGCGTCCGGCGACGATCAGCGACGTCGCGCGCGAGGCCGGCACGGGCAAGACCAG
CGTTTCGCGCTACCTGAACGGCGAGACGCATGTGCTGTCCGTCGATCTGCGCCAGCGGATCGAGGCGGCCATCGCGCGGC
TCAACTACCGGCCGAACCAGATGGCGCGCGGGCTCAAGCGCGGCCGCAACCGGCTGCTCGGCATGCTCGCGGCCGACCTG
ACCAATCCTTACACCGTCGAAGTGCTGCAGGGCGTCGAGGCCGCGTGCCATGCGCTCGGCTACATGCCGCTCATCTGTCA
CGCGGCGAACGAAGTCGAGATGGAGCGCCGCTTCCTGCAGCTGCTCACGACCTACCGCGTCGAAGGGCTGATCGTCAACG
CGCTCGGCGCCGAGGAAGACGTGCTGCGCCCGCTGCGCGGCGCCGGCATTCCGGCGGTGCTCGTCGACCGCACGGTCGAG
GGCTTCGAGGCCGACCTGATCGGCCTCGACAACACCGACGCGATCGAGACGGCGCTTGCGCATCTGGTCGAGCACGGTTT
CGACGCGATCCATTTCGTCGTGCAGCCGTTCGAGCAGGTCAGCTCGCGGCGCGTGCGCGAGGCCGCGTTCCGCGCGGCGC
TGGCCGCACGCGGGCTGCCGGTGCCGCCGACGGTCGTGCTCGACCTGAACGAACCCGACGCGGCCGCGGCGGCGCTCGCC
GACGTCGATGTCCGCATCGACGATGCAGCCCGGCGCGGCGTGCGCGCGGCGCTGTTCGCCGCGAACGCGCCGGTCGCGCT
GGCGATCGCGCGCCACCTGCGCGCGCGCTTCGGCGCCGCGTGGCAGCAAAAGGCGGCGCTGCTGTCGATCGACGATCCGG
AATGGGCCGAGCTGATCGGCATCACGACGATCCGTCAGCCGACCTACGAAATCGGCTACAAGGCCGTCGAATTCGTGCAC
GAGCGGATCGACGGCGCGGCGGGCGACGTGCGCGTCGCGATGCTGCCCGGCGAGTTGATTGCGCGCGCGTCGACCGCAAG
CTGA

Upstream 100 bases:

>100_bases
CGCGCCAGGACAGGGGAGGCCGCCGGTTGGCTTACGTTTCCAACAACAAAGGTCCGTCTGCTCACGAAGCGGCGCGGATC
GTACGTCGCGAGGCACGACA

Downstream 100 bases:

>100_bases
GTATCATTCGGGGCACGCGGCGTGTCAGGTGCGCTGCTTCGAACCAAGGAAATACATGACTGTCGCTCCCGTCACGCTGG
CCGCGCTGATCGCCGCCACG

Product: LacI family transcription regulator

Products: NA

Alternate protein names: Kdg operon repressor [H]

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MTDTQPSTTRPATISDVAREAGTGKTSVSRYLNGETHVLSVDLRQRIEAAIARLNYRPNQMARGLKRGRNRLLGMLAADL
TNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQLLTTYRVEGLIVNALGAEEDVLRPLRGAGIPAVLVDRTVE
GFEADLIGLDNTDAIETALAHLVEHGFDAIHFVVQPFEQVSSRRVREAAFRAALAARGLPVPPTVVLDLNEPDAAAAALA
DVDVRIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQQKAALLSIDDPEWAELIGITTIRQPTYEIGYKAVEFVH
ERIDGAAGDVRVAMLPGELIARASTAS

Sequences:

>Translated_347_residues
MTDTQPSTTRPATISDVAREAGTGKTSVSRYLNGETHVLSVDLRQRIEAAIARLNYRPNQMARGLKRGRNRLLGMLAADL
TNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQLLTTYRVEGLIVNALGAEEDVLRPLRGAGIPAVLVDRTVE
GFEADLIGLDNTDAIETALAHLVEHGFDAIHFVVQPFEQVSSRRVREAAFRAALAARGLPVPPTVVLDLNEPDAAAAALA
DVDVRIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQQKAALLSIDDPEWAELIGITTIRQPTYEIGYKAVEFVH
ERIDGAAGDVRVAMLPGELIARASTAS
>Mature_346_residues
TDTQPSTTRPATISDVAREAGTGKTSVSRYLNGETHVLSVDLRQRIEAAIARLNYRPNQMARGLKRGRNRLLGMLAADLT
NPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQLLTTYRVEGLIVNALGAEEDVLRPLRGAGIPAVLVDRTVEG
FEADLIGLDNTDAIETALAHLVEHGFDAIHFVVQPFEQVSSRRVREAAFRAALAARGLPVPPTVVLDLNEPDAAAAALAD
VDVRIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQQKAALLSIDDPEWAELIGITTIRQPTYEIGYKAVEFVHE
RIDGAAGDVRVAMLPGELIARASTAS

Specific function: Transcriptional repressor of the kdg operon for pectin utilization [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790194, Length=323, Percent_Identity=29.1021671826625, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1790369, Length=355, Percent_Identity=26.7605633802817, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788474, Length=321, Percent_Identity=27.1028037383178, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787948, Length=342, Percent_Identity=27.4853801169591, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI48994940, Length=220, Percent_Identity=30, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787906, Length=232, Percent_Identity=27.5862068965517, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789202, Length=229, Percent_Identity=28.3842794759825, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787580, Length=225, Percent_Identity=28.8888888888889, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1786540, Length=345, Percent_Identity=25.7971014492754, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790689, Length=208, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789068, Length=338, Percent_Identity=23.6686390532544, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786268, Length=166, Percent_Identity=28.3132530120482, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790715, Length=179, Percent_Identity=28.4916201117318, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 37517; Mature: 37386

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTQPSTTRPATISDVAREAGTGKTSVSRYLNGETHVLSVDLRQRIEAAIARLNYRPNQ
CCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGMLAADLTNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
LLTTYRVEGLIVNALGAEEDVLRPLRGAGIPAVLVDRTVEGFEADLIGLDNTDAIETALA
HHHHHHHHHEEEECCCCCHHHHHHHHCCCCCEEEHHCCCCCCCCCEECCCCCHHHHHHHH
HLVEHGFDAIHFVVQPFEQVSSRRVREAAFRAALAARGLPVPPTVVLDLNEPDAAAAALA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
DVDVRIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQQKAALLSIDDPEWAELIG
HCCEEECHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHCCEEEECCCCHHHHHHH
ITTIRQPTYEIGYKAVEFVHERIDGAAGDVRVAMLPGELIARASTAS
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCCC
>Mature Secondary Structure 
TDTQPSTTRPATISDVAREAGTGKTSVSRYLNGETHVLSVDLRQRIEAAIARLNYRPNQ
CCCCCCCCCCCHHHHHHHHCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCHHH
MARGLKRGRNRLLGMLAADLTNPYTVEVLQGVEAACHALGYMPLICHAANEVEMERRFLQ
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHH
LLTTYRVEGLIVNALGAEEDVLRPLRGAGIPAVLVDRTVEGFEADLIGLDNTDAIETALA
HHHHHHHHHEEEECCCCCHHHHHHHHCCCCCEEEHHCCCCCCCCCEECCCCCHHHHHHHH
HLVEHGFDAIHFVVQPFEQVSSRRVREAAFRAALAARGLPVPPTVVLDLNEPDAAAAALA
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH
DVDVRIDDAARRGVRAALFAANAPVALAIARHLRARFGAAWQQKAALLSIDDPEWAELIG
HCCEEECHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHCCEEEECCCCHHHHHHH
ITTIRQPTYEIGYKAVEFVHERIDGAAGDVRVAMLPGELIARASTAS
HHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]